Pairwise Alignments

Query, 542 a.a., peptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 525 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens GW456-L13

 Score =  404 bits (1039), Expect = e-117
 Identities = 218/514 (42%), Positives = 322/514 (62%), Gaps = 9/514 (1%)

Query: 14  LEVARTGQQVVKSVSFDLAPGEIFGIVGESGSGKTLATRALISLLPPTIKVADGSVSYKG 73
           L VA +GQ VV+++  D+ PGE   +VGESGSGK++   +++ LLP T     GS+ Y+G
Sbjct: 10  LSVAFSGQTVVRNLCLDIRPGECLALVGESGSGKSVTAHSILQLLPQTDTETTGSIRYRG 69

Query: 74  RDVLKMKENELRHLRGAEIGVVFQEPMTSLNPSMTIGRQLEEGLILHTKASAQERRSLIL 133
           ++++     +LR LRG  I ++FQEPMTSLNP  +I +Q+ E L++H   + +  ++ IL
Sbjct: 70  QELVGADAGKLRKLRGNRIAMIFQEPMTSLNPLHSIEKQIGETLLVHKGLAGKAAQARIL 129

Query: 134 DMLKRVGIRDPEGALSSYPHEFSGGMRQRIMLASVMLLKPALLIADEPTTALDAVIQRDV 193
           ++L  VGI+ PE  L +YPH+ SGG RQR+M+A  +  +P LLIADEPTTALD  +QR +
Sbjct: 130 ELLHLVGIQKPEERLKAYPHQLSGGQRQRVMIAMALACEPELLIADEPTTALDVTVQRKI 189

Query: 194 MELMVELTRAEGTAILLISHDLPMVARYTSRIVVMEKGAIVEKGRTEDLLKAPQHPYTKK 253
           + L+  L +  G ++LLISHDL +V     R+ VM+ G IVE+   E L   P+HPY+  
Sbjct: 190 LLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPCETLFTEPRHPYSCI 249

Query: 254 LLSSLP-FRGRPRQIDLTSVPMISARDIIVDYAGRKSLFRKNKPKRALHGVSIDIHEGEV 312
           LL + P     PR        ++   ++ V +     LF++    RA+ G+S++I  G+ 
Sbjct: 250 LLHAEPEGEALPRD---ERENVLEVDNLQVRFPVGGGLFQRKTWLRAVDGISLNIQRGKT 306

Query: 313 VALVGGSGSGKTTLGRTIAGLVTESEGRIQFQGRP----RTENWTDYRLNCQMVFQDPYS 368
           + +VG SGSGK+TLG+ I  L+ +SEG I+FQG+       +    +R   Q+VFQDP+ 
Sbjct: 307 LGIVGESGSGKSTLGQAILRLL-DSEGGIRFQGQALDGLTQKQLRPWRKKMQVVFQDPFG 365

Query: 369 SLDPRMTIEALVEEALRPVPGLDGKAKRKRTLETLEEVGLGVDYAGRYPHELSGGQRQRV 428
           SL PRM++  ++ E L     L  +      +  L EVGL      RYPHE SGGQRQR+
Sbjct: 366 SLSPRMSVAQIISEGLEVHSQLSTEECNAEVIRALNEVGLDPQSRHRYPHEFSGGQRQRI 425

Query: 429 AIARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGVVEQVAD 488
           AIARA+  +P  ++ DEP SALD TV+ QV+ L   LQ++YG + LFISHDL VV  +A 
Sbjct: 426 AIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQEKYGLTYLFISHDLAVVRALAH 485

Query: 489 RVVVMQDGRIIEEGDRDTIFDSPKEAYTRRLLSA 522
            ++V++DG+++E G    +FDSP+  YT+ LL+A
Sbjct: 486 DMIVIKDGKVVERGASHEVFDSPQHPYTKELLAA 519



 Score =  171 bits (432), Expect = 8e-47
 Identities = 111/277 (40%), Positives = 158/277 (57%), Gaps = 28/277 (10%)

Query: 274 MISARDIIVDYAGRKSLFRKNKPKRALHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAGL 333
           +I  RD+ V ++G+            +  + +DI  GE +ALVG SGSGK+    +I  L
Sbjct: 4   LIEIRDLSVAFSGQT----------VVRNLCLDIRPGECLALVGESGSGKSVTAHSILQL 53

Query: 334 V----TESEGRIQFQGRP-------RTENWTDYRLNCQMVFQDPYSSLDPRMTIEALVEE 382
           +    TE+ G I+++G+        +       R+   M+FQ+P +SL+P  +IE  + E
Sbjct: 54  LPQTDTETTGSIRYRGQELVGADAGKLRKLRGNRI--AMIFQEPMTSLNPLHSIEKQIGE 111

Query: 383 ALRPVPGLDGKAKRKRTLETLEEVGLGV--DYAGRYPHELSGGQRQRVAIARAIARRPRF 440
            L    GL GKA + R LE L  VG+    +    YPH+LSGGQRQRV IA A+A  P  
Sbjct: 112 TLLVHKGLAGKAAQARILELLHLVGIQKPEERLKAYPHQLSGGQRQRVMIAMALACEPEL 171

Query: 441 LIADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGVVEQVADRVVVMQDGRIIE 500
           LIADEP +ALDVTV+ ++L L   LQ+R G S L ISHDL +V  +A RV VM+ G I+E
Sbjct: 172 LIADEPTTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVE 231

Query: 501 EGDRDTIFDSPKEAYTRRLLSAIP---ALDQNEKGGV 534
           +   +T+F  P+  Y+  LL A P   AL ++E+  V
Sbjct: 232 QAPCETLFTEPRHPYSCILLHAEPEGEALPRDERENV 268