Pairwise Alignments

Query, 542 a.a., peptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 531 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  379 bits (974), Expect = e-109
 Identities = 220/527 (41%), Positives = 319/527 (60%), Gaps = 23/527 (4%)

Query: 14  LEVARTGQQVVKSVSFDLAPGEIFGIVGESGSGKTLATRALISLLPPTIKVADGSVSYKG 73
           L VA  GQ+VV  ++F +  GE   +VGESGSGKT++  +L+ L+        G    +G
Sbjct: 8   LRVAFGGQEVVHGINFAIRAGEKLALVGESGSGKTVSALSLLRLVHNA--EVSGRALLQG 65

Query: 74  RDVLKMKENELRHLRGAEIGVVFQEPMTSLNPSMTIGRQLEEGLILHTKASAQERRSLIL 133
           RD+L + E +LR +RG E+ VVFQEPM++LNP  T+G Q+ E L L    +A++  +   
Sbjct: 66  RDLLALSERQLRGVRGDEVAVVFQEPMSALNPLYTVGDQIREVLQLKKGLTARQAVAASH 125

Query: 134 DMLKRVGIRDPEGALSSYPHEFSGGMRQRIMLASVMLLKPALLIADEPTTALDAVIQRDV 193
           ++L   GI +P     ++PH+ SGG RQR M+A  +   P LL+ADEPTTALD  ++  +
Sbjct: 126 ELLASTGIPEPARRADAFPHQLSGGQRQRAMIAMALASAPKLLLADEPTTALDVSLRVQI 185

Query: 194 MELMVELTRAEGTAILLISHDLPMVARYTSRIVVMEKGAIVEKGRTEDLLKAPQHPYTKK 253
           ++L+ +L R  G A+LLI+HDL +V R+  RI VME+G +VE+G   D+  AP+HPYT+K
Sbjct: 186 LDLLADLQRQHGMAVLLITHDLNLVRRFADRIAVMERGHLVEQGGVGDVFAAPEHPYTRK 245

Query: 254 LLSSLPFR--GRPRQIDLTSVPMISARDIIVDY----AGRKSLFRKNKPKRALHGVSIDI 307
           LL+S P R    P   D  + P++ ++ + V Y     G +  FRK +   A+ G  + I
Sbjct: 246 LLASKPERDVAEPVVRD-DAAPVLRSQGLRVTYPVGLPGFRGWFRKGE-FVAVKGADMAI 303

Query: 308 HEGEVVALVGGSGSGKTTLGRTIAGLVTESEGRIQFQG-----RPRTENWTDYRLNCQMV 362
             G+ + ++G SGSGK+TL     GL+   +G +Q  G       +       R   Q+V
Sbjct: 304 APGQTLGVIGESGSGKSTLALAALGLLPH-QGSLQIDGTDWAKAKKAGRGRALRQRIQVV 362

Query: 363 FQDPYSSLDPRMTIEALVEEALR-PVPGLDGKAKRKRTLETLEEVGL------GVDYAGR 415
           FQDP+SSL PR+T+E +V E L+   P L    +R+R +  L +VGL      G D+  R
Sbjct: 363 FQDPFSSLSPRLTVEQIVGEGLQVHQPALSVAQRRERVVAALADVGLVDDPERGGDWLQR 422

Query: 416 YPHELSGGQRQRVAIARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLF 475
           YPHE SGGQRQR+AIARA+   P+ L+ DEP SALDVTV+ QVL L   LQ+  G S L 
Sbjct: 423 YPHEFSGGQRQRLAIARALIVDPQLLVLDEPTSALDVTVQKQVLSLLQRLQRERGLSYLL 482

Query: 476 ISHDLGVVEQVADRVVVMQDGRIIEEGDRDTIFDSPKEAYTRRLLSA 522
           I+HD+ V+  +A  V+VM+DG ++E G  D +  +P+  YTR L+ A
Sbjct: 483 ITHDVDVIHAMAHEVMVMKDGAVVESGPVDRVLRAPEHPYTRALVQA 529



 Score =  168 bits (426), Expect = 4e-46
 Identities = 97/244 (39%), Positives = 146/244 (59%), Gaps = 11/244 (4%)

Query: 297 KRALHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAGLVTESE--GRIQFQGRPRTENWTD 354
           +  +HG++  I  GE +ALVG SGSGKT    ++  LV  +E  GR   QGR      ++
Sbjct: 15  QEVVHGINFAIRAGEKLALVGESGSGKTVSALSLLRLVHNAEVSGRALLQGRDLLA-LSE 73

Query: 355 YRLN------CQMVFQDPYSSLDPRMTIEALVEEALRPVPGLDGKAKRKRTLETLEEVGL 408
            +L         +VFQ+P S+L+P  T+   + E L+   GL  +     + E L   G+
Sbjct: 74  RQLRGVRGDEVAVVFQEPMSALNPLYTVGDQIREVLQLKKGLTARQAVAASHELLASTGI 133

Query: 409 G--VDYAGRYPHELSGGQRQRVAIARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDLQ 466
                 A  +PH+LSGGQRQR  IA A+A  P+ L+ADEP +ALDV++R Q+LDL +DLQ
Sbjct: 134 PEPARRADAFPHQLSGGQRQRAMIAMALASAPKLLLADEPTTALDVSLRVQILDLLADLQ 193

Query: 467 KRYGFSCLFISHDLGVVEQVADRVVVMQDGRIIEEGDRDTIFDSPKEAYTRRLLSAIPAL 526
           +++G + L I+HDL +V + ADR+ VM+ G ++E+G    +F +P+  YTR+LL++ P  
Sbjct: 194 RQHGMAVLLITHDLNLVRRFADRIAVMERGHLVEQGGVGDVFAAPEHPYTRKLLASKPER 253

Query: 527 DQNE 530
           D  E
Sbjct: 254 DVAE 257