Pairwise Alignments

Query, 276 a.a., transposase ISRM1 from Sinorhizobium meliloti 1021

Subject, 309 a.a., IS3 family transposase from Agrobacterium fabrum C58

 Score = 58.5 bits (140), Expect = 2e-13
 Identities = 63/279 (22%), Positives = 118/279 (42%), Gaps = 30/279 (10%)

Query: 2   KSVCETLGVARSNIAARAAGSPSRARGRPPLPDRELVEDIKAVIADMPTYGYRRVHAILR 61
           +  C+ +   R  I  R+         RPP  + EL   ++ +  +   +GYRR+  +LR
Sbjct: 23  RRACQIISADRKMIRYRSC--------RPP--EVELRLRLRDLANERRRFGYRRLFILLR 72

Query: 62  RNARKLGRSWPNAKRVYRVMKLHNLLLVRHTG---AVDNRLHEGQVAVE-RSNIRWCSDG 117
           R+    G       R+YR+ +   L + +      AV  R     + VE ++N RW  D 
Sbjct: 73  RDGEPSG-----VNRIYRLYREEGLSVRKRKARRRAVGTR---APILVEAKANARWSLDF 124

Query: 118 FEIGCDNKEKVRVAFALDCCDREAIAHVATTEGIKSQDVQDLVITAVENRFGRINMLSEP 177
                    + RV   +D   RE +A +  T     +  ++L  TA+  R G+  ++   
Sbjct: 125 VHDQFACGRRFRVLNIVDDVTRECLAAIPDTSISGRRVAREL--TALIPRRGKPGVI--- 179

Query: 178 IEWLTDNGSCFIAKDTASLLRDIGMEPCTTPVRSPQSNGMAEAFVKTFKRDYVAVNPTPD 237
              ++DNG+   +    +  +D  ++        P  NG  E+F    + + +  +    
Sbjct: 180 ---VSDNGTELTSNAILAWSKDHKVDWHYIAPGRPMQNGYVESFNGRMRDELLNESLFFG 236

Query: 238 AETVMAQLPFWFEHYNNLHPHSALGYQSPREFISSQSQT 276
            +   + +  W + YN+  PHS+LGYQ+P  +  + + T
Sbjct: 237 LDHARSAIAEWADDYNHFRPHSSLGYQTPAAYAGTIAAT 275