Pairwise Alignments

Query, 460 a.a., sensor histidine kinase transmembrane protein from Sinorhizobium meliloti 1021

Subject, 437 a.a., HAMP domain-containing protein from Pseudomonas fluorescens SBW25

 Score =  157 bits (398), Expect = 5e-43
 Identities = 123/437 (28%), Positives = 209/437 (47%), Gaps = 25/437 (5%)

Query: 31  PMGLYARSILIVVIPMVLLQSVVAFVFMERHWQLVTQRLSSAVTNDIAAIVDLITTFPRE 90
           P   ++R++ +V+I ++  +++     +     LV ++ +  V   + A   +       
Sbjct: 8   PQSFFSRTLWLVLIVVLFSKALTLVYLLMNEDVLVDRQYAHGVALTLRAYWAV------- 60

Query: 91  GDIDQIVRIARDQLDLNITVEPGGELPPPRPKPFFEILDQILSEEISD--QIRRPFWIDT 148
            D +   ++A+      I VE  G     +  P+ EI  + + +E+ +  ++R    +  
Sbjct: 61  -DPENREKVAK--ASTLIRVEGAGVPEGEQHWPYSEIYQRQMRDELGEDTEVRLRMHV-- 115

Query: 149 VGNSKIVEIRIKLEDDRILRVYARRNQAYASNTHIFLVWMVGASLVLLTIAILFLRGQIR 208
              S  + +R     D  ++V    +          L W +   L+    A +F+R   +
Sbjct: 116 ---SPALWVRAPSLGDAWIKVPLYPHPLRGQKIWNVLGWFLAIGLLSTASAWIFVRQLNQ 172

Query: 209 PILALASAAESFGKGQKIDDFAPRGANEIRRAGLAFILMRERIERQIEQRTAMLTGVSHD 268
           P+  L  AA   G+G+ +        +E+     AF  M E +E+   +R  ML GVSHD
Sbjct: 173 PLKRLVFAARQLGQGRSVRLPVSDTPSEMTEVYGAFNQMAEDVEQAGRERELMLAGVSHD 232

Query: 269 LRTILTRFKLQLALVGNNPDL-ESLNQDVEDMQNMLEGYLAFARGDAEEDVGRLKLSDLM 327
           LRT LTR +L L L+GN+ DL + + +D+EDM  +L+ +LAF R   +E V  + L+DL+
Sbjct: 233 LRTPLTRLRLSLELMGNHTDLTDDMVRDIEDMDAILDQFLAFIRDGRDEVVEEVDLTDLV 292

Query: 328 ARLAAEAELYGKTLTTAIQGENEIHVRPNAFTRLVSNLASNAYRYANT-----VHIEARQ 382
             + A     G+ +   ++      +R  +  RL++NL  NA  +A +      ++    
Sbjct: 293 REVVAPYNQNGEQVRMRLEPIQPFALRRVSMKRLLNNLIGNALHHAGSDVEVAAYVSGDS 352

Query: 383 SAKWLTITVDDDGPGIPERSREDVFKPFFRLDEARNLDSSGTGLGLAVARDIARSHGGNV 442
           +A ++ ++V D G GI     E +F PF R D AR     GTGLGLA+ R IA  HGGNV
Sbjct: 353 AAPYVVLSVMDRGAGIDPDELEGIFNPFTRGDRARG--GKGTGLGLAIVRRIASMHGGNV 410

Query: 443 TLADSPLGGLRATVRVP 459
            L +   GGL A VR+P
Sbjct: 411 ELRNREEGGLEARVRLP 427