Pairwise Alignments

Query, 184 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

Subject, 173 a.a., putative ECF sigma factor PrtI from Pseudomonas putida KT2440

 Score = 79.3 bits (194), Expect = 3e-20
 Identities = 58/164 (35%), Positives = 82/164 (50%), Gaps = 24/164 (14%)

Query: 10  REMLAALPSLRAFAMSLIGRHDRADDLVQDTIMKAWAKQDHFEIGTNMKAWLFTILRNEL 69
           RE+LA L   R FA+ L      ADDLVQ T+ +A +++D       ++AWLFTIL  + 
Sbjct: 10  RELLARL---RRFAVWLTREPGSADDLVQATVERALSRRDQQRDADALRAWLFTILYRQF 66

Query: 70  YSQMRKR----------GREVQDSD--GHLTETLAHHPEQYGSLDLQDFRRALEQLPPDQ 117
               R+           GR   D +  G   ET+          DLQ F R    L  +Q
Sbjct: 67  LDGKRRERLHARWLSWFGRNEHDDEPVGDNLETIV-----LAQADLQAFAR----LTAEQ 117

Query: 118 REAIILVGASGFSYEEAATICGCALGTIKSRVNRARQRLQEILQ 161
           R  ++LV   G SY+EAA   G  +GT+ SR++RAR  L+E+ +
Sbjct: 118 RALLLLVSIEGLSYKEAAQALGIPIGTVMSRLSRARNALRELTE 161