Pairwise Alignments

Query, 184 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

Subject, 171 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 84.3 bits (207), Expect = 1e-21
 Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 8/163 (4%)

Query: 7   EFKREMLAALPSLRAFAMSLIGRHDRADDLVQDTIMKAWAKQDHFEIGTNMKAWLFTILR 66
           EF   +     SLR  AM+L    D A DLVQ+T++KA   +D F+ GTN+KAWL+TI+R
Sbjct: 5   EFNNLVQNVAQSLRPAAMNLTRDADDAKDLVQETMLKALTNRDKFKAGTNLKAWLYTIMR 64

Query: 67  NEL---YSQMRKRGREVQDSDG----HLTETLAHHPEQYGSLDLQDFRRALEQLPPDQRE 119
           N     Y+++ KR   +  S+     +  E+     +   +  + D  +A+  L  + R 
Sbjct: 65  NTFINNYNKVIKRSSNIDSSEYLQYLNTDESYVTQNKGTATFVMNDINKAIAGLNEEHRT 124

Query: 120 AIILVGASGFSYEEAATICGCALGTIKSRVNRARQRLQEILQV 162
             ++    GF Y E A      +GT+K+R++ AR+ L+++L+V
Sbjct: 125 PFMMYYV-GFKYLEIAEKLQIPIGTVKNRIHIARKELKKVLKV 166