Pairwise Alignments

Query, 184 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

Subject, 177 a.a., RNA polymerase sigma-54 factor RpoN from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  107 bits (266), Expect = 2e-28
 Identities = 67/173 (38%), Positives = 99/173 (57%), Gaps = 10/173 (5%)

Query: 9   KREMLAALPSLRAFAMSLIGRHDRADDLVQDTIMKAWAKQDHFEIGTNMKAWLFTILRN- 67
           + E++  +P LR +A +L G    ADDLVQDT+ +A AK   + +GT+++AWLFT++ N 
Sbjct: 3   RSELIDQIPGLRRYARALTGDPWAADDLVQDTLERACAKWRLWTVGTDLRAWLFTLMHNL 62

Query: 68  ---ELYSQMRKRGREVQ-DSDGHLTETLAHHPEQYGSLDLQDFRRALEQLPPDQREAIIL 123
               L    R+ GR +  D D    E +A    Q  +LDLQ   R L +LP +QR  ++L
Sbjct: 63  HASGLRQAQRREGRGLAVDPDDVAAELVAPDTAQDLALDLQ---RCLLRLPEEQRVVLLL 119

Query: 124 VGASGFSYEEAATICGCALGTIKSRVNRARQRLQEILQVRGENDYGPDETSAP 176
           V     SYE+ A I G  +GT+ SR++RAR RLQ +L    ++   P +  AP
Sbjct: 120 VSLEDMSYEQVARITGSPIGTVMSRLSRARTRLQALLNAAAQS--VPPDADAP 170