Pairwise Alignments

Query, 398 a.a., transporter from Sinorhizobium meliloti 1021

Subject, 376 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  121 bits (304), Expect = 3e-32
 Identities = 85/311 (27%), Positives = 150/311 (48%), Gaps = 18/311 (5%)

Query: 90  RLNAIGNGEAIRSVTVTPTATGNLTEILVKSGDRITEGQVIARLDSDDQMIAAEQARLTR 149
           R++++G  +A++ V ++    G + ++  +SG ++  GQ + +LDS  +    E A+   
Sbjct: 57  RVSSVGTLKALQGVNLSLEIAGTVKDVQFESGQKVKTGQPLVQLDSAVESALLETAQADL 116

Query: 150 DSAREKVERYRNLSTARAVTAVEVRDSEIALQAAELALKTAELDLKRRDIVAPSKGVVGI 209
             A+    R   L  ++A++  E       LQ  +  +   +  L ++ IVAP  G +GI
Sbjct: 117 GLAQLDYGRGSQLVGSQAISKGEFDRLSAQLQKNKATVNQLKASLAKKHIVAPFGGTIGI 176

Query: 210 ITVNIGDYVTTSTPIAVVDDRSQILVDFWVPERFAGKISVDQPVTASAIAQPGRALQGVV 269
             V++GDY+ + T IA + D S + VDF++PE    K++  QPV     A PG    G +
Sbjct: 177 RQVDVGDYLASGTVIATLQDLSSLYVDFYIPEHAVPKVAPGQPVQVEVSAYPGEQFPGSI 236

Query: 270 HAIDNRLDPESRTLRVRARLENPDDMLRAGMSFSVTVAFDGDRYPTVDPL-AIQWSSEGS 328
            AI+ +++  +R + VRA L NP+  L  GM   + V         V P  AI ++  G+
Sbjct: 237 SAINPKVENSTRNVLVRATLANPEGKLLPGMFTRLDVLLPNPAPQIVVPEGAITYTLYGN 296

Query: 329 FIWRVKGDK-----------------SERVPIKIIQRNPDKVLVDAELAEGDRVVTEGVQ 371
            ++ V   K                 +ER  ++  +R    VLV   L  G++VV+ G  
Sbjct: 297 SVYAVAEKKTEGGEVEKDADGKPLLIAERRFVETGERRGGLVLVSKGLKAGEQVVSAGQL 356

Query: 372 RLRDGGVVRIA 382
           +L +G  + I+
Sbjct: 357 KLDNGTPIAIS 367