Pairwise Alignments

Query, 398 a.a., transporter from Sinorhizobium meliloti 1021

Subject, 415 a.a., multidrug efflux system, subunit A from Escherichia coli BL21

 Score =  119 bits (297), Expect = 2e-31
 Identities = 109/411 (26%), Positives = 189/411 (45%), Gaps = 44/411 (10%)

Query: 9   ISVVVLAVGGAAWVRLAPGAGETLAAIGVSQPLIDALSGPQGGEGARGGSGDSERGQGRR 68
           + VVV+A   A W        ++ A     Q    A   P GG             +G R
Sbjct: 12  VIVVVIAAIAAFWFWQGRNDSQSAAPGATKQ----AQQSPAGGR------------RGMR 55

Query: 69  SGFAEAPLVVVKPAERAVVNDRLNAIGNGEAIRSVTVTPTATGNLTEILVKSGDRITEGQ 128
           SG   AP+      E+AV    L  +G   A  +VTV     G L  +  + G ++  G 
Sbjct: 56  SG-PLAPVQAATAVEQAVPR-YLTGLGTITAANTVTVRSRVDGQLMALHFQEGQQVKAGD 113

Query: 129 VIARLDSDDQMIAAEQAR--LTRD-----SAREKVERYRNLSTARAVTAVE-------VR 174
           ++A +D     +A  QA+  L +D     +AR  + RY+ L     V+  E       V 
Sbjct: 114 LLAEIDPSQFKVALAQAQGQLAKDKATLANARRDLARYQQLVKTNLVSRQELDAQQALVS 173

Query: 175 DSEIALQAAELALKTAELDLKRRDIVAPSKGVVGIITVNIGDYVTT--STPIAVVDDRSQ 232
           ++E  ++A E ++ +A+L L    I AP  G VG+  V++G+ +++  +T I V+     
Sbjct: 174 ETEGTIKADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHP 233

Query: 233 ILVDFWVPERFAGKI----SVDQPVTASAIAQPG--RALQGVVHAIDNRLDPESRTLRVR 286
           I + F +PE     +       +P+   A  +    +  +G + ++DN++D  + T++V+
Sbjct: 234 IDLLFTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVK 293

Query: 287 ARLENPDDMLRAGMSFSVTVAFDGDRYPTVDPLA-IQWSSEGSFIWRVKGDK--SERVPI 343
           AR  N DD L      +  +  D ++   V P A +Q  +EG F+W +  +   S+ +  
Sbjct: 294 ARFNNQDDALFPNQFVNARMLVDTEQNAVVIPTAALQMGNEGHFVWVLNSENKVSKHLVT 353

Query: 344 KIIQRNPDKVLVDAELAEGDRVVTEGVQRLRDGGVVRIAGEPAAEAEQKVA 394
             IQ +  KV++ A ++ GDRVVT+G+ RL +G  V +    +A   ++ A
Sbjct: 354 PGIQ-DSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVVEAQSATTPEEKA 403