Pairwise Alignments

Query, 789 a.a., exoribonuclease II protein from Sinorhizobium meliloti 1021

Subject, 722 a.a., 3'-to-5' exoribonuclease RNase R from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  351 bits (900), Expect = e-101
 Identities = 235/673 (34%), Positives = 343/673 (50%), Gaps = 53/673 (7%)

Query: 157 DRVLAKIFPAKERGGPAYTARIIKVLDKRKDAVLGVFRATPGGGGRLMPIDKR-GEELLI 215
           DRV A+I     +G P    R+ +++++    ++G       G   + P DKR G+++LI
Sbjct: 5   DRVKARIVRLDRKGRPE--GRVTEIVERSDSPIIGRL-LQESGVWLVAPEDKRYGQDVLI 61

Query: 216 DPEFIGDAKEGDLVEAHLSRI-GRYGLPRAQVQNVVGSVASEKAISMIAIHAHGIPHVFP 274
                G AK G +V   L+     YG P  +V+ V+G +        IA+  +G+PH F 
Sbjct: 62  PKGATGSAKPGQVVVVQLTEPPALYGQPVGRVKEVLGEIDDPGMEIEIAVRKYGVPHEFS 121

Query: 275 ERVLQEAEA----ARPATMAHREDWRTLPLITIDPADAKDHDDAVYAEPDSSPDNPGGVI 330
           +  L +A A     R A   HR D R +PL+TID  DA+D DDAVY EP       G  +
Sbjct: 122 DAALAQARALPDHVRAADHKHRVDLRDVPLVTIDGEDARDFDDAVYCEPAKVGKGKGWRL 181

Query: 331 VTVAIADVSWYVRARSALDLEALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPALA 390
           + VAIADVS YV   S +D++A  R  SVYFP RV+PMLPE++SN LCSL  GV+R  + 
Sbjct: 182 L-VAIADVSHYVETGSPIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPGVERLCMV 240

Query: 391 VRMRFSKEGRKAGHTFHRIMMRSAAKLSYQQAQTAIDGA--PDDKTGPILDTILKPLWEA 448
             M  + +G    + F+  +M S A+ +Y +    +     P+      L   L  L + 
Sbjct: 241 CDMLVNAKGEVHAYQFYPAVMFSHARFTYTEVAAILQNTRGPEAAQRKALVPYLLNLHDV 300

Query: 449 YRTLTRGRERRQPLELDVPERKIILKPDGTVDRVFVPERLDAHKLIEEMMIQANVAAAET 508
           YR L   R  R  ++ +  E +I+    G ++++    R DAHKLIEE M+ ANV +A+ 
Sbjct: 301 YRALLAARGERGAVDFETTETQIVCDESGRIEKIVPRTRNDAHKLIEEAMLAANVCSADF 360

Query: 509 LEQKRQVLIYRVHDQPSLAKQESLREFLATLDIALAKGGNMRANHFNGILAKADGKPYET 568
           ++Q +   ++RVH+ P+  KQE LR +L  + ++   G N +   F  I      +P   
Sbjct: 361 IQQGKHTGLFRVHEGPTPEKQEILRNYLKAMGVSQTIGDNPKPGDFQAIANATKDRPEAQ 420

Query: 569 IVNQMVLRSQSQAIYSPENIGHFGLNLLRYAHFTSPIRRYADLIVHRALVSALGL----- 623
            ++ M+LRS  QAIY+P N GHFGL    Y HFTSPIRRY DL+VHR + + L       
Sbjct: 421 QIHTMLLRSMQQAIYTPVNSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAILARKRYEL 480

Query: 624 ------GEGGIM----------------PEEEAALDDIA-----AEISTFERRAMAAERD 656
                 GE                    P ++ + D +A        S  ERRA  A RD
Sbjct: 481 PNLPTPGEAHAKLSKRLASRVRPPVAGEPVKKPSADTLAWQAAGLHCSANERRADEASRD 540

Query: 657 TIDRLIAHHLNGRVGEEFDGRVSGVTKAGLFVTLPAYGADGFIPISTLGRDYFIYDEAHQ 716
               L   ++   +GEEF G V+ VT  GLFVTL A   +G + I+ LG +YF +DEA Q
Sbjct: 541 VEAWLKCKYMREHLGEEFSGVVTAVTSFGLFVTLDAMYVEGLVHITELGGEYFRFDEARQ 600

Query: 717 ALSGEKSGLGYRLGDPVQVKLVEAVPLAG-ALRFEMLSEGRKMPTAMRSFHKAGRRDRTG 775
            L GE++G+ Y LG  V+V+ V  V L G  + F ++S+   +   +R+      RD+TG
Sbjct: 601 ELRGERTGIRYALGTRVKVQ-VSRVDLDGRRIDFRLVSDNDDL--VLRAM-----RDKTG 652

Query: 776 ARKRPGTRPPRGR 788
                  + P  R
Sbjct: 653 MSPASDNQAPPAR 665