Pairwise Alignments

Query, 789 a.a., exoribonuclease II protein from Sinorhizobium meliloti 1021

Subject, 813 a.a., exoribonuclease R, RNase R from Escherichia coli BL21

 Score =  376 bits (965), Expect = e-108
 Identities = 276/763 (36%), Positives = 394/763 (51%), Gaps = 48/763 (6%)

Query: 40  VPSREVLMRFIAENPQHASKREIAKAFGLKGEARVE-LKGLLRSLEEDG-LVEKKRKSLV 97
           +PSRE ++  + +  + AS+ E+A    ++GE ++E L+  LR++E DG LV  +R+   
Sbjct: 18  IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77

Query: 98  RPGGLPPVTVLDITIRDVDGDLIGRPAEWLDDDGVAPAVLIKQSSVARAKGKTPVGGLGD 157
            P  L  V    I  RD  G L     E   DD            ++  + KT + G  D
Sbjct: 78  LPERLDLVKGTVIGHRDGYGFL---RVEGRKDD----------LYLSSEQMKTCIHG--D 122

Query: 158 RVLAKIFPAKERGGPAYTARIIKVLDKRKDAVLGVFRATPGGGGRLMPIDKR-GEELLID 216
           +VLA+   A  +G     ARI++VL  +   ++G +  T  G G ++P D R   ++LI 
Sbjct: 123 QVLAQPLGADRKG--RREARIVRVLVPKTSQIVGRY-FTEAGVGFVVPDDSRLSFDILIP 179

Query: 217 PEFIGDAKEGDLVEAHLS-RIGRYGLPRAQVQNVVGSVASEKAISMIAIHAHGIPHVFPE 275
           P+ I  A+ G +V   L+ R  R      ++  V+G          IA+  H IP+++P+
Sbjct: 180 PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239

Query: 276 RVLQEA----EAARPATMAHREDWRTLPLITIDPADAKDHDDAVYAEPDSSPDNPGGVIV 331
            V Q+     E       A R D R LPL+TID  DA+D DDAVY E        GG  +
Sbjct: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG----GGWRL 295

Query: 332 TVAIADVSWYVRARSALDLEALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPALAV 391
            VAIADVS+YVR  + LD EA  RG SVYFP +V+PMLPE +SN LCSL   VDR  +  
Sbjct: 296 WVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVC 355

Query: 392 RMRFSKEGRKAGHTFHRIMMRSAAKLSYQQAQTAIDGAPD--DKTGPILDTILKPLWEAY 449
            M  S +GR  G+ F+  +M S A+L+Y +    + G  D  ++  P++   L+ L   Y
Sbjct: 356 EMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELHNLY 414

Query: 450 RTLTRGRERRQPLELDVPERKIILKPDGTVDRVFVPERLDAHKLIEEMMIQANVAAAETL 509
           + L + RE R  +  +  E K I   +  ++R+   +R DAHKLIEE MI AN++AA  +
Sbjct: 415 KVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFV 474

Query: 510 EQKRQVLIYRVHDQPSLAKQESLREFLATLDIALAKGGNMRANHFNGILAKADGKPYETI 569
           E+ ++  ++R+HD+PS     S R  LA L + L  G       +  +L     +P   +
Sbjct: 475 EKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEM 534

Query: 570 VNQMVLRSQSQAIYSPENIGHFGLNLLRYAHFTSPIRRYADLIVHRALVSALGLGE---- 625
           +  M+LRS  QAIY PEN GHFGL L  YAHFTSPIRRY DL +HRA+   L   +    
Sbjct: 535 LQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQG 594

Query: 626 -----GGIMPEEEAALDDIAAEISTFERRAMAAERDTIDRLIAHHLNGRVGEEFDGRVSG 680
                GG     E  L  +    S  ERRA  A RD  D L    +  +VG  F G +S 
Sbjct: 595 NTTETGGYHYSMEEML-QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISS 653

Query: 681 VTKAGLFVTLPAYGADGFIPISTLGRDYFIYDEAHQALSGEKSGLGYRLGDPVQVKLVEA 740
           VT  G FV L     DG + +S+L  DY+ +D+  Q L GE SG  YRLGD V+V+ VEA
Sbjct: 654 VTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVR-VEA 712

Query: 741 VPL-AGALRFEMLSE---GRKMPTAMRSFHKAGRRDRTGARKR 779
           V +    + F ++S     R +    R   K G   + G ++R
Sbjct: 713 VNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRR 755