Pairwise Alignments

Query, 924 a.a., ribonuclease E protein from Sinorhizobium meliloti 1021

Subject, 1097 a.a., Rne/Rng family ribonuclease from Paraburkholderia sabiae LMG 24235

 Score =  425 bits (1092), Expect = e-123
 Identities = 273/725 (37%), Positives = 390/725 (53%), Gaps = 43/725 (5%)

Query: 227 EEVADRHIRK--PRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMP 284
           +EVA ++ R+    +  RIQ+ +K  Q L+VQV KEERGNKGAALTT++SLAGRY VLMP
Sbjct: 71  KEVARQYFREGIDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130

Query: 285 NTARGGGISRKITNLQDRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRL 344
           N  RGGG+SR+I    DR+ L+E    L +P+GM +I RTAG  R+  E++ D  YLM+L
Sbjct: 131 NNPRGGGVSRRIEG-DDRQELRETMSQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQL 189

Query: 345 WENVRTLTLNSTA--PCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLM 402
           W  +   + + T   P L+Y E SL+ R+IRD +  DI EI++   E + +A+ FM ++M
Sbjct: 190 WRAIEAASQSGTQGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVM 249

Query: 403 PSHAKVVQPYRDVHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRS 462
           P +   V+ Y D  P+FSR  IE Q++      V L SGG I+I+ TEALV+IDVNS R+
Sbjct: 250 PDNVNKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARA 309

Query: 463 TREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKN 522
           T+   IE+TA +TNLEAA+EVARQLRLRDL GLIVIDFIDME  ++ R VE++LKD LK+
Sbjct: 310 TKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKH 369

Query: 523 DRARIQVGRISHFGLLEMSRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEE 582
           DRAR+Q+G+IS FGL+E+SRQR+R ++ E +  TCP CNGTGHIR   S AL VLR I+E
Sbjct: 370 DRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQE 429

Query: 583 HLLKNTTHDISVRTTPDIALYLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAIDRGE 642
             +K  T  I  +   ++  +LLN+KRS I   E RF V++ +  + H+   H+ ++R  
Sbjct: 430 EAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLVPNKHLDTPHYKLERLR 489

Query: 643 PVENPVRIDQILQFEPEPEDEEEVLIEEESDEEEVEEIAAERQDPKKGQTDEQGGRKRKR 702
              +  R+D         E+    L  E    +  EE+  +++   KG T E+       
Sbjct: 490 --HDDARLDDPRASWKMAEEAARELESETGYSKRAEEVKPKQEAAVKGITPEKPAPSAPV 547

Query: 703 RRRRRGKGA---------------GQGADEAFADAADAAEDETGDEAAVDDAEDEVDATD 747
           R                       G    +  A A   A  E   + A  +  +  + T 
Sbjct: 548 RTPAPAAATVEVQPATGGFIGWLKGLFGMQPAAPAPAPAPVEKTTKPARGERTERGERTG 607

Query: 748 ALNGDSEQKRKRRRRGKRGGR-RSRQDELAEAEGETGMAAEAGEGAGDDAEAEVAPAAAA 806
              GD    R R RRG  GGR  + + E A  +G  G  ++ GE    +      P    
Sbjct: 608 ERGGD----RNRNRRGGAGGRDAAGRGEGAATQGRQGQPSQRGERQEREPREAREPRGGR 663

Query: 807 EETSPDIAAAAAVEAAAEEPKPAKPRRSRKKAVKAEEPAESVD-----------EVAEKT 855
           E+     A          E +P +  R +++A   E   E  +           E AE+ 
Sbjct: 664 EQREGREAREPRDAREGREARPERVERGQERAEATEARGERQERGERRERGERAERAERG 723

Query: 856 VEAQPEATEAAPEAVEEAVADLEGAKPARANRDLSAIATEPVVTSSKGEGEEEPTKPKKG 915
              + + TE A EA+ +  A ++ A  A+AN    A    P   +  GE      + ++G
Sbjct: 724 ERRKQQQTETA-EALSQDEAQMDVAAQAQANLAGGA----PGEEARDGEERRRRRRGRRG 778

Query: 916 GWWQR 920
           G  +R
Sbjct: 779 GRRER 783



 Score = 82.8 bits (203), Expect = 1e-19
 Identities = 39/96 (40%), Positives = 63/96 (65%)

Query: 3  EKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYG 62
          ++ML +A+  EE RV +V G ++ + D E+  ++Q +GNIY   VTR+EPSL+A FV+YG
Sbjct: 2  KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNYG 61

Query: 63 GNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEAR 98
           +RHGFL F E+   Y++  +  R A ++   +E +
Sbjct: 62 EDRHGFLPFKEVARQYFREGIDMRSARIQDALKEGQ 97