Pairwise Alignments

Query, 514 a.a., RNA polymerase factor sigma-54 from Sinorhizobium meliloti 1021

Subject, 477 a.a., RNA polymerase factor sigma-54 from Dickeya dianthicola ME23

 Score =  288 bits (738), Expect = 2e-82
 Identities = 193/509 (37%), Positives = 275/509 (54%), Gaps = 42/509 (8%)

Query: 3   LSASLHLRQSQSLVMTPQLMQSIQLLQMNHLELSHFIAQEVEKNPLLEVQPADEPTISDR 62
           +   L LR SQ L MTPQL Q+I+LLQ++ LEL   I Q +E NPLLE     +  I D 
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQQALESNPLLE-----QADIHDE 55

Query: 63  EDAGPHPAETGGETDEAAGQSDLYDSAMSRSGERLSEGLDADFANVFPDDTAPQRADAPE 122
            +          +T EA  Q D+ D             LDA +  ++   T    +    
Sbjct: 56  VETQESSDSETLDTREALEQKDMPDELP----------LDAAWDEIYTAGTPSGTST--- 102

Query: 123 LLGQWKSMPGAGDAEGYDLDDFVGGR-KTLRETLAEQLPFALSAVSDRLIARYFIDQLDD 181
                       D    +L  + G   +TL++ L  Q+     + +D  IA   +D +D+
Sbjct: 103 ------------DYRDEELPVYQGETTQTLQDYLMWQVELTPFSDTDSAIATSIVDAVDN 150

Query: 182 AGYLHADLAETAETLG---AAGEDVARVLHVLQQFDPPGVFARTLGECLAIQLRARN--- 235
            GYL   L +  E++G      E+V  VL  +Q+FDP GV AR L ECL +QL   +   
Sbjct: 151 TGYLTVSLDDIRESIGNDEVTLEEVEAVLKRVQRFDPVGVAARDLRECLLVQLSQFDNSI 210

Query: 236 -RLDPAMEALVANLELLARRDFASLKKICGVDEEDLIDMLAEIRKLDPKPGTSFETGVFE 294
            RL  A   +   L LLA  DF +L +   + EE L + LA I+ LDP+PG S  TG  E
Sbjct: 211 PRLAEARLIVSEYLNLLANHDFRTLIRTSRLKEEVLKESLALIQSLDPRPGQSINTGESE 270

Query: 295 AIIPDVVVRAAPDGGWLVELNPDALPRVLVNHDYFTEISRSSRKNSGEQAFLNECLQNAN 354
            +IPDV+VR    G W VELN D++PR+ +N  Y      SS +N  +  F+   LQ A 
Sbjct: 271 YVIPDVLVRKI-QGHWTVELNTDSVPRLQINQQYAA--LGSSARNDSDGQFIRSHLQEAR 327

Query: 355 WLTRSLDQRARTIMKVASEIVRQQDAFLIHGVGHLRPLNLRIVADAIKMHESTVSRVTSN 414
           WL +SL+ R  T++KV   IV QQ AF  HG   ++P+ L  +A A+ MHEST+SRVT+ 
Sbjct: 328 WLIKSLESRNDTLLKVTRCIVEQQQAFFEHGEEFMKPMVLADIAQAVDMHESTISRVTTQ 387

Query: 415 KYMLTPRGLFELKYFFTVSIGSAENGDAHSAESVRHRIRTMINQESADAVLSDDDIVDVL 474
           K++ +PRG+FELKYFF+  + S +NG   S+ ++R  +R +I  E+    LSD  +  +L
Sbjct: 388 KFLHSPRGIFELKYFFSSHV-STDNGGEASSTAIRALVRKLIAAENPAKPLSDSKLTSLL 446

Query: 475 KQAGVDIARRTVAKYREAMSIPSSVQRRR 503
            + G+ +ARRTVAKYRE++SIP S QR++
Sbjct: 447 SEHGIIVARRTVAKYRESLSIPPSNQRKQ 475