Pairwise Alignments

Query, 573 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 348 a.a., rRNA pseudouridine synthase from Magnetospirillum magneticum AMB-1

 Score =  311 bits (798), Expect = 2e-89
 Identities = 176/375 (46%), Positives = 231/375 (61%), Gaps = 34/375 (9%)

Query: 1   MTSKDKPTRPGGKAKGRDKKPHSGS-EKPAA--RAAGSGPAAPAGA----DEPQRISKIL 53
           M+  D+P   G  +   + KP  G+ E P A  R+ GS    P        E +RI+K L
Sbjct: 1   MSKTDRPASEGQTSS--EAKPKRGATEAPGAQRRSQGSEGDRPVSEGQTKSEGERIAKRL 58

Query: 54  SRAGVASRRDVERMIMEGRVSLNGVVLDTPVVNATLADRIEVDGHPIRGIERTRLWLYHK 113
           +RAG+ SRR+ ER I +GRV++NG  L +P       D + VDG P+   E+TRLW YHK
Sbjct: 59  ARAGLCSRREAERWIEDGRVTVNGHRLSSPACVVGPGDIVIVDGIPLSEPEKTRLWRYHK 118

Query: 114 PGGLVTTNADPEGRPTVFENLPEELPRVLSVGRLDINTEGLLLLTNDGGLARVLELPSTG 173
           P GLVTT+ DPEGRPTVF++LPE +PRV+SVGRLD+N+EGLLLLTNDG LAR LELPS  
Sbjct: 119 PAGLVTTHKDPEGRPTVFDHLPEGMPRVISVGRLDLNSEGLLLLTNDGELARKLELPSNA 178

Query: 174 WLRRYRVRAHGEIDQEALDRLKEGIAVDGVLYGAIEATLDRVQGSNVWITMGLREGKNRE 233
           WLRRYRVR HGE+ ++AL RL+ GI +DG+ YG I ATLDR QG+N W+++ LREGKNRE
Sbjct: 179 WLRRYRVRVHGEVSEDALARLENGITIDGMAYGPISATLDRRQGANAWLSVSLREGKNRE 238

Query: 234 IKNVLGALGLDVNRLIRISYGPFQLGELPIGQVQEIRGRTLREQLGPRLIADSKANFDAP 293
           I+ V+  LG  V+RLIR+SYGPFQLG L  G   E+ G+ LREQ+G              
Sbjct: 239 IRRVMEYLGWPVSRLIRVSYGPFQLGTLEEGAADEVAGKVLREQMG-------------- 284

Query: 294 IYNDQPAAAEPEAEPADHGKAEWGSKREKAEDKRERALARLDTRRDDGRPSERGRSRGKP 353
              +  A  +P+AE    G        E+ +++R  A AR     +D R +   + +   
Sbjct: 285 ---EGKAVLKPKAETKSAG--------EREKEQRVAAKARKQKLAEDKRAASAKKDKPYE 333

Query: 354 EERPARPPVRRNRSS 368
             +  +P   R RSS
Sbjct: 334 ARQAGKPDAHRRRSS 348



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 468 GERAVRPADDRTSSEGRKESARPPRGDGKKSFAGDRPRASAG-GKPVAAKPASGKPAAHR 526
           G+  ++P  +  S+  R++  R      K+  A D+  ASA   KP  A+ A GKP AHR
Sbjct: 286 GKAVLKPKAETKSAGEREKEQRVAAKARKQKLAEDKRAASAKKDKPYEARQA-GKPDAHR 344



 Score = 27.7 bits (60), Expect = 8e-04
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 477 DRTSSEGRKES-ARPPRGDGKKSFAGDRPRASAGGKPVA 514
           DR +SEG+  S A+P RG  +   A  R + S G +PV+
Sbjct: 5   DRPASEGQTSSEAKPKRGATEAPGAQRRSQGSEGDRPVS 43