Pairwise Alignments

Query, 383 a.a., ribonuclease D protein from Sinorhizobium meliloti 1021

Subject, 371 a.a., Ribonuclease D (EC 3.1.26.3) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  154 bits (388), Expect = 5e-42
 Identities = 102/364 (28%), Positives = 180/364 (49%), Gaps = 17/364 (4%)

Query: 1   MIQTTADLEAACRELARSSYITIDTEFLRETTFWPVLCLIQMASPEMAVIVDPMAPGIDL 60
           MI+T   L + C  +     I +DTEF+R  T++P L LIQ+       ++DP+    D 
Sbjct: 1   MIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPLGIS-DW 59

Query: 61  APFFALMSNPDVVKVFHAARQDIEIIHHLGNLIPHPIFDTQVAAMVCGFGDSVSYDQLVN 120
           +P  A++ +  + K  HA  +D+E+  +    +P P+ DTQ+ A  CG   S  +  +V 
Sbjct: 60  SPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLSWGFASMVE 119

Query: 121 RIKNEQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDIYQYLTKELDREGRSSWLAEEM 180
                 +DKS   TDW  RPL+++Q +YA ADV +L  I + L  E +  G      +E 
Sbjct: 120 EYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDEC 179

Query: 181 AILESRETYDLHPDNAWQRL----KMRVKKPIELAVLQKVAAWREREARARNVPRGRIIK 236
            +++ R      P+ AW+ +    ++R +   +LA LQ +A WR R+AR R++    +++
Sbjct: 180 RLMQQRRQEIQAPEEAWRDITNAWQLRTR---QLACLQLLADWRLRKARERDMAVNFVVR 236

Query: 237 DDAIYEIAQQQPKDAEALGRLRTIP-KGWERSSAGTALIEAVGEALAIPRGELPRLPRQN 295
           ++ ++ +A+  P    +LG L ++   G E    G  LI  V +A A+P   LP      
Sbjct: 237 EENLWAVARYMP---GSLGELDSLGLSGSEIRFHGKTLISLVAKAQALPEEALPEPLLNL 293

Query: 296 HAPEGAAAASELLKVLLKLISEKEGVAAKIIANSDDLDRI-----AAEGEGADVAALKGW 350
               G   A + +K L+  +S    V+ +++A+   ++++       + +      + GW
Sbjct: 294 MDMPGYRKAFKAIKALVAEVSASHHVSGELLASRRQINQLLNWHWKLKPQNGQPELISGW 353

Query: 351 RREL 354
           R EL
Sbjct: 354 RAEL 357