Pairwise Alignments

Query, 383 a.a., ribonuclease D protein from Sinorhizobium meliloti 1021

Subject, 375 a.a., ribonuclease D from Escherichia coli BL21

 Score =  159 bits (403), Expect = 9e-44
 Identities = 106/365 (29%), Positives = 187/365 (51%), Gaps = 19/365 (5%)

Query: 1   MIQTTADLEAACRELARSSYITIDTEFLRETTFWPVLCLIQMASPEMAVIVDPMAPGI-D 59
           MI T   L + C  +     I +DTEF+R  T++P L LIQ+   E   ++DP+  GI D
Sbjct: 5   MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITD 62

Query: 60  LAPFFALMSNPDVVKVFHAARQDIEIIHHLGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
            +P  A++ +P + K  HA  +D+E+  ++   +P P+ DTQ+ A  CG   S  +  +V
Sbjct: 63  WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122

Query: 120 NRIKNEQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDIYQYLTKELDREGRSSWLAEE 179
                  +DKS   TDW  RPLT++Q +YA ADV +L  I   L  E +  G      +E
Sbjct: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182

Query: 180 MAILESRETYDLHPDNAWQRL----KMRVKKPIELAVLQKVAAWREREARARNVPRGRII 235
             +++ R    + P++AW+ +    ++R +   +LA LQ +A WR R+AR R++    ++
Sbjct: 183 CRLMQMRRQEVVAPEDAWRDMTNAWQLRTR---QLACLQLLADWRLRKARERDLAVNFVV 239

Query: 236 KDDAIYEIAQQQPKDAEALGRLRTIP-KGWERSSAGTALIEAVGEALAIPRGELPRLPRQ 294
           +++ ++ +A+  P    +LG L ++   G E    G  L+  V +A  +P   LP+    
Sbjct: 240 REEHLWSVARYMP---GSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEEALPQPMLN 296

Query: 295 NHAPEGAAAASELLKVLLKLISEKEGVAAKIIANSDDLDRI-----AAEGEGADVAALKG 349
                G   A + +K L+  +SE   ++A+++A+   ++++       + +      + G
Sbjct: 297 LMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISG 356

Query: 350 WRREL 354
           WR EL
Sbjct: 357 WRGEL 361