Pairwise Alignments

Query, 314 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 306 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  143 bits (361), Expect = 5e-39
 Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 9/298 (3%)

Query: 1   MNAVTDIFASAGLWAAVLRIATPLILGTLGALLCERSGVLNLGIEGIMTFGAMIGWLAVY 60
           M+A   +   AG+    LR+  P +  +LG  L E+SG +NLG+EG++   AM+ + A Y
Sbjct: 1   MSADQFLIFLAGIVGGALRVGVPFLFVSLGECLTEKSGRINLGLEGVLVLSAMVAFGASY 60

Query: 61  NGADLWTGILVAGLSGGIFGLLHAGLTVTLGLSQHVSGLGVTLFASSFSYYVFRLLV-PV 119
                W G+L A ++G +   LH  L     ++   +G+ + L     ++Y+ + L+ P 
Sbjct: 61  LSGSPWVGVLAAAVAGALLATLHGLLCSLPRVNDIATGIALMLLGMGLAFYLGKPLIQPQ 120

Query: 120 AGTPPTIEPFQPIDVPALSSLPFLGPALFTQTPPTYVAILLALVLGYVLFRTPLGLAIRM 179
           A   P I      + PA+ S   +   L        + ++LAL +G+   RT  GL +RM
Sbjct: 121 AAQLPAIPLGFWSESPAVRSALQINALL-------PIGLVLALAMGWAFARTRAGLLVRM 173

Query: 180 TGENPHAAEAQGINPMAIRFGSVIVGSALMGIGGAFLTLSAFNSFFPTMVQGRGWICIAL 239
            G++ +A  A G +   IR  +   G  + G+GGA LTL    S+   +  G+G I +AL
Sbjct: 174 AGDSANATRALGYSVSGIRIAATAAGGLIAGLGGASLTLFYPGSWNEGISSGQGLIAVAL 233

Query: 240 VVFASWRPGRALVGALLFALFDGFQLRLQTRLSGVVPYQIFLMIPYLLSIAALALMAR 297
           V+FA W P R +  ALLF         LQ+   G   Y +F ++PY+L++  L L  R
Sbjct: 234 VIFARWSPLRCVGAALLFGGAGAIGPALQSIGIG-WGYHLFNIVPYVLTLLILVLTCR 290