Pairwise Alignments

Query, 314 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 307 a.a., ABC transporter, membrane spanning protein (sugar) from Agrobacterium fabrum C58

 Score =  187 bits (474), Expect = 4e-52
 Identities = 113/284 (39%), Positives = 155/284 (54%), Gaps = 6/284 (2%)

Query: 17  VLRIATPLILGTLGALLCERSGVLNLGIEGIMTFGAMIGWLAVYNGADLWTGILVAGLSG 76
           V+  ATPL++   G L+ ERSGVLNLG+EG+M  GA+  + A +     + GIL    SG
Sbjct: 12  VITAATPLVIAASGELVAERSGVLNLGVEGMMIMGAVCAFAATHMTGSPYLGILAGIASG 71

Query: 77  GIFGLLHAGLTVTLGLSQHVSGLGVTLFASSFSYYVFRLLVPVAGTPPTIEPFQPIDVPA 136
            +F LL   LT+TL  +Q  +GL +T+     S  +    V + G        QPI  P 
Sbjct: 72  AVFSLLFGFLTLTLVTNQVATGLALTILGLGVSGMLGESFVGLPGIK-----LQPIVFPV 126

Query: 137 LSSLPFLGPALFTQTPPTYVAILLALVLGYVLFRTPLGLAIRMTGENPHAAEAQGINPMA 196
           LS +PF+GP LF Q    Y++I L   + + LF++  GL IR  G+N  +A A GIN + 
Sbjct: 127 LSEIPFIGPLLFRQDLIFYMSIALVFGISWFLFKSRAGLKIRAIGDNHASAHALGINVIR 186

Query: 197 IRFGSVIVGSALMGIGGAFLTLSAFNSFFPTMVQGRGWICIALVVFASWRPGRALVGALL 256
            R+ +V+ G A  G+ GA L+L     +   M  GRGWI +ALVVFASWRP R L G  L
Sbjct: 187 TRYLAVMFGGACAGLAGAQLSLVYTPQWVENMSAGRGWIALALVVFASWRPWRLLAGGYL 246

Query: 257 FALFDGFQLRLQTRLSGVVPYQIFLMIPYLLSIAALALMARRAR 300
           F      QL  Q    G VP Q+   +PYL +I  L +++   R
Sbjct: 247 FGAVTIGQLHAQAFGIG-VPSQLLSALPYLATIVVLVIISHNRR 289