Pairwise Alignments

Query, 508 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 517 a.a., D-ribose ABC transporter, ATPase component RbsA (from data) from Pseudomonas simiae WCS417

 Score =  278 bits (712), Expect = 3e-79
 Identities = 182/497 (36%), Positives = 266/497 (53%), Gaps = 21/497 (4%)

Query: 4   AILNICSVSKRFGDNLANDDISLSLGKGEIVALLGENGAGKTTLMSILFGHYVPDSGKVL 63
           A+L++  + K +   + +D I+L+L +GE++AL GENGAGK+TL  I+ G   P +G + 
Sbjct: 8   AVLSVSGIGKTYAQPVLSD-ITLTLNRGEVLALTGENGAGKSTLSKIIGGLVTPTTGHMQ 66

Query: 64  VEGRELPPGKPRAAIRAGIGMVHQHFSLAPNLTVLENVMAGTERLWHLRSGTSAARRKLH 123
             G++  PG    A   G+ MV Q  +L P LTV EN+      L +L S      RK  
Sbjct: 67  FNGQDFRPGSRTQAEELGVRMVMQELNLLPTLTVAENLF-----LDNLPSHCGWISRKQL 121

Query: 124 R-----ICQRFGL-TVEPDARVGDLSVGEQQRVEILKALYNDAHILVLDEPTAVLTNLEA 177
           R        + GL  ++PD  VG L +G QQ VEI + L  D H+L+LDEPTA+LT  E 
Sbjct: 122 RKAAIEAMAQVGLDAIDPDTLVGSLGIGHQQMVEIARNLIGDCHVLILDEPTAMLTAREV 181

Query: 178 ERLFSTLKDMAREGLSLIFISHKLDEVMAAANRIVVLRGGRKVAERLAKETNKAELAELM 237
           E LF  +  +   G+++I+ISH+L+E+   A RI VLR G+ V        N  +L  LM
Sbjct: 182 EMLFEQITRLQARGVAIIYISHRLEELARVAQRIAVLRDGKLVCVEPMANYNSEQLVTLM 241

Query: 238 VGRRVARPV-REPSTPGEVVLKVADVSVSIDGVERLKSIDFSLRAGEVLGIIGVSGNGQT 296
           VGR +   +   P T G   L V  ++ S    ++++ + F +RAGE+ GI G+ G G+T
Sbjct: 242 VGRELGEHIDLGPRTIGGPALTVKGLTRS----DKVRDVSFEVRAGEIYGISGLIGAGRT 297

Query: 297 TLAHLLSGTLRRDKGDLLLFGEPIGDLTVD---DAVRAGIGRIPEDRNKEGAIGEMAIWE 353
            L  L+ G    D G + L G P   +++    DAV  GI  I EDR  EG +   +I  
Sbjct: 298 ELLRLIFGADLADSGTVAL-GSPAQVVSIRSPVDAVGHGIALITEDRKGEGLLLTQSISA 356

Query: 354 NAVLERLPRFSRYGLVDRPSGQAFAGQIIDAFDVRGGRPTTRTRLLSGGNMQKLILGRNL 413
           N  L  +P  S  G+V+     A A + IDA  +R   P      LSGGN QK+++GR L
Sbjct: 357 NIALGNMPEISGGGVVNSRDETALAKRQIDAMRIRSSSPAQLVSELSGGNQQKVVIGRWL 416

Query: 414 MDRPRILLAAQPARGLDEGAVAAVHERLLEARRAGTAVLLISEDLEEVMALADRIQAIVN 473
                ++L  +P RG+D GA   ++  L E  R G A++++S DL E+M + DRI  +  
Sbjct: 417 ERDCSVMLFDEPTRGIDVGAKFDIYALLGELTRQGKALVVVSSDLRELMLICDRIGVLSA 476

Query: 474 GRLSPPIAADSASATKL 490
           GRL      DS +  +L
Sbjct: 477 GRLIETFERDSWTQDEL 493



 Score = 73.9 bits (180), Expect = 1e-17
 Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 15/236 (6%)

Query: 272 LKSIDFSLRAGEVLGIIGVSGNGQTTLAHLLSGTLRRDKGDLLLFGEPIGDLTVDDAVRA 331
           L  I  +L  GEVL + G +G G++TL+ ++ G +    G +   G+     +   A   
Sbjct: 24  LSDITLTLNRGEVLALTGENGAGKSTLSKIIGGLVTPTTGHMQFNGQDFRPGSRTQAEEL 83

Query: 332 GIGRIPEDRNKEGAIGEMAIWENAVLERLPRFSRYGLVDRP-----SGQAFAGQIIDAFD 386
           G+  + ++ N    +  + + EN  L+ LP  S  G + R      + +A A   +DA D
Sbjct: 84  GVRMVMQELN---LLPTLTVAENLFLDNLP--SHCGWISRKQLRKAAIEAMAQVGLDAID 138

Query: 387 VRGGRPTTRTRLLSGGNMQKLILGRNLMDRPRILLAAQPARGLDEGAVAAVHERLLEARR 446
                P T    L  G+ Q + + RNL+    +L+  +P   L    V  + E++   + 
Sbjct: 139 -----PDTLVGSLGIGHQQMVEIARNLIGDCHVLILDEPTAMLTAREVEMLFEQITRLQA 193

Query: 447 AGTAVLLISEDLEEVMALADRIQAIVNGRLSPPIAADSASATKLGLMMAGEWNEEH 502
            G A++ IS  LEE+  +A RI  + +G+L       + ++ +L  +M G    EH
Sbjct: 194 RGVAIIYISHRLEELARVAQRIAVLRDGKLVCVEPMANYNSEQLVTLMVGRELGEH 249