Pairwise Alignments

Query, 328 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 368 a.a., Nucleoside ABC transporter, periplasmic nucleoside-binding protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 95.5 bits (236), Expect = 2e-24
 Identities = 87/325 (26%), Positives = 142/325 (43%), Gaps = 16/325 (4%)

Query: 8   SRRNVLASGLVLGVSALAPAVRASAPIKVAGVHASPVEN-AWNSVLHKALQDAAAEGVIE 66
           +RR  + +   LG +A +P   A  PI V  ++  P ++  +N    +A         ++
Sbjct: 7   TRRETIKTLAALGAAAASPWALAQKPITVGVIYVGPRDDYGYNQAHAEAAAQLKKMAGVK 66

Query: 67  YVFSEGISGTD-YPRAMREY-AEQGAKLIIGEAYAV-EKQAREVAADYPETAFV----LG 119
            V  E +  T    R+M    A+ GA L+   ++   +     VA  +P+  F     + 
Sbjct: 67  VVEEENVPETAAVQRSMTGMIAQDGASLVFPTSFGYFDPHMLAVAGKFPDARFAHCGGMW 126

Query: 120 SSGKESGDNFGVFGTWNHDGAYLAGMLAGKMTKSNVVGSVGAMPIPEVNMLINAFAAGVK 179
           + GK   +    FG +  +  YL G++AG MTKSN +G + A PIP+V   INAF  G +
Sbjct: 127 TEGKHPKNTASFFG-YIDECQYLNGVIAGHMTKSNKIGFIAAKPIPQVLRNINAFTMGAR 185

Query: 180 AVNPDAKHLVTFIGTFFDPPKAREAGLAQIDAGADI----LFGERIGTADAAKERGLKSV 235
           +V P     V F G +  P K  EA  +  D G D+    + G ++    AAK RG    
Sbjct: 186 SVKPGITTQVIFTGDWSMPVKEAEATNSMADQGVDVFTMHVDGPKVIVETAAK-RGKMVC 244

Query: 236 GSLIDYTPRYPDTVFANALWGFRPILNAAIADVSAGKPVGKDYTAFGLLKEGGSDVAYVK 295
           G         P      A W +     A +    +GKP   ++   GL +      AY  
Sbjct: 245 GYHASQAKLAPQAYLTGAEWNWLTAYTAFLEAARSGKP-HPNFVRGGLKEGFVKPSAYGP 303

Query: 296 GVAPADAEAAMEAKRAEIKSGAFEV 320
            V  A A+   +  +A++ +G+F++
Sbjct: 304 AVTDA-AKKQADGIKAQMMAGSFDI 327