Pairwise Alignments

Query, 369 a.a., DNA polymerase IV from Sinorhizobium meliloti 1021

Subject, 429 a.a., type VI secretion protein ImpB from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  112 bits (280), Expect = 2e-29
 Identities = 84/286 (29%), Positives = 140/286 (48%), Gaps = 7/286 (2%)

Query: 20  IHIDMDAFYASVEQRDNPELRGKPVAV--GYPEARGVVAAASYEARKFGVHSAMPSVTAK 77
           + +D++AF+ASVEQ+ NP+ RGKPV V     E  G +AA SYE++ +GVH+ M    A+
Sbjct: 10  LFVDLNAFFASVEQQMNPDWRGKPVIVRPAMSEYTGAIAA-SYESKAWGVHTGMRVSEAR 68

Query: 78  RKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGLKLATEIA 137
           + CP+LI    R D+Y  + +QI A    + P+ +  S+DE   ++    R    A  +A
Sbjct: 69  KLCPDLIVAEARPDLYVKIHQQIMAEIDRHVPVWKVGSIDECSCELLGPERLEANAVALA 128

Query: 138 EEIRGRIRAETH--LTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGPDFVQALPVKKF 195
             I+  I       L +S G++ ++FLAK A   +KP GL V+     P  +  LP+ K+
Sbjct: 129 RRIQAGILQNVGDCLRSSVGLAPSRFLAKTACGMQKPAGLTVLRANELPGPLLDLPLSKY 188

Query: 196 HGVGPATAEKMKRLGIETGADLKSRDLAFLQQHFGK-SGPYFYWIARGIDERKVKPDRIR 254
            G+G     +++  G+   A L +      +  +    G   +    G+D     P++  
Sbjct: 189 PGIGSRMQVRLQAAGVTDTAGLWNMSAKQARAVWNSIEGERIWRGLHGLDSEPT-PEKPP 247

Query: 255 KSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTL 300
            SI       + +   + ARA  + L+ K        G+ G ++TL
Sbjct: 248 ASISHSHVLAQAMRTPDKARAVARRLVVKCGARLRRMGLTGASLTL 293