Pairwise Alignments

Query, 443 a.a., penicillin-binding protein from Sinorhizobium meliloti 1021

Subject, 662 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Variovorax sp. SCN45

 Score = 94.0 bits (232), Expect = 1e-23
 Identities = 109/439 (24%), Positives = 171/439 (38%), Gaps = 91/439 (20%)

Query: 26  RIYPNGSLAAHILGAVD-IDNFGIAGIEKWIDANWLADLRGA------------------ 66
           R YP+G +A+H++G +  I+      +E W D    A+ RG                   
Sbjct: 161 RSYPHGEVASHVIGYIGRINQREKTAMEDW-DEEEQANYRGTDYIGKLGIEQSYEKTLHG 219

Query: 67  ------------GLALKGRDLQP------VELSIDLRVQYAMEQELGKAVKKFGAAAGAG 108
                       G A++     P      V LS+D+++Q  +E         FG   GA 
Sbjct: 220 QTGVEQMETSAGGRAVRRLARHPATPGNTVMLSLDIKLQKLVED-------MFGERRGAL 272

Query: 109 LLLDVTNGEILALASYPAFDPNNPVDAFKPDR------------INRVTAGVFEMGSTFK 156
           + +D   GEILA  S P FDPN  V+    +             +NR   G +  GST+K
Sbjct: 273 VAIDPKTGEILAFVSKPTFDPNLFVEGIDHESWAALIESIDKPLLNRALRGTYPPGSTYK 332

Query: 157 ALTTAMALESGRFDLESVVDASRPLSFGRQRIHDYRGKYRPLTVPEAFIHSSNIVMAKMA 216
                 ALE+G    + + +     SFG +    +RG    + +  A   SSN     +A
Sbjct: 333 PFMALAALETGARAADKIENDPGSYSFGGRTFLSHRGGLGGVDMHRAIQFSSNTYFYSLA 392

Query: 217 MTLGPEALRTFLGRFG--------VLSQLATELP----ESAAPLRP--SSWSEVTTATVS 262
             +G + +  F+   G        +L +    LP    + AA  RP   +W    T ++ 
Sbjct: 393 NEMGVDLIHEFMAPLGFGQFTGIDLLGESRGVLPSKAWKRAAYRRPDMKTWHAGETISLG 452

Query: 263 FGHGI-AVTPLQASMAVAALANGGRLIRPTF---IKDSPVSERTIAESLLSANTSEAIRH 318
            G G  + T LQ + A A LANGG   RP     IKD+   E        + +   A +H
Sbjct: 453 IGQGYNSFTMLQLASANATLANGGMHYRPHLVRAIKDTVTEEIVAQVQPQARDLGYAQKH 512

Query: 319 LLRLNAAVGSATKADV-------PGYVIGGKTGTAEKVVQGRYSKV---------LNVTS 362
           +  +  A+ + TK            Y   GKTGTA+ V  G  ++           +   
Sbjct: 513 VDVVRNAMVAVTKGGTGTRVFAGAAYTSAGKTGTAQAVSLGPKARASGKALEERQRDHAL 572

Query: 363 FMGIVPADNPRYLLLTLLD 381
           +M   PA+ P   +  +++
Sbjct: 573 YMAFAPAEAPTIAVAAIVE 591