Pairwise Alignments

Query, 304 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 308 a.a., Integrase/recombinase, RitB from Variovorax sp. SCN45

 Score =  187 bits (476), Expect = 2e-52
 Identities = 123/304 (40%), Positives = 162/304 (53%), Gaps = 10/304 (3%)

Query: 2   LSQLLADHAALHQALGFKFRTPGVLLRNFVAFAEHRGEHVITTATVHEWA-LQAPSPEQR 60
           L   L  +  + +  GFK++     L +FV+F +      ITT    EWA L A      
Sbjct: 4   LHSALQRYLNMRKGFGFKYQHQTRRLADFVSFMDKCKATTITTKLAMEWATLPAGRHASW 63

Query: 61  RNRLLTVRRFALSLHAEDPRHEVPSADLFGRASRKRRTPYIYSPEEIRRLIDAARRLGPD 120
             RL  VR F+  + + DP+ EVP   L    S KR  PY+YS E++  L+ AA  L P 
Sbjct: 64  ALRLTDVRGFSRHIASFDPKTEVPPVGLL--PSLKRAKPYVYSDEDVSALLAAALSLPPA 121

Query: 121 DSIRSLTYATMFGLIAATGMRVSEAIAIRLHDVTDDG--LIIAQTKFKKSRLLPLHTTTR 178
            ++R  TY  +FGLIA TGMR+SEAI +   DV  D   L I  TKF+KSRL+PLH TT 
Sbjct: 122 GALRRWTYHCLFGLIAVTGMRLSEAIGLECGDVDLDAGVLTIRLTKFRKSRLVPLHPTTS 181

Query: 179 RALDGYLATRLK--AASQSDALFISHQGTPLAYPTVITVFLQIIRSIGLRGAPGSRGPRI 236
            AL  Y   R       ++   F++ +G PL +  V  VF ++ R IGLR      GPR+
Sbjct: 182 AALRDYKQRRDTHLPTRRTPHFFVAERGGPLLHQYVHRVFWRLSREIGLRRPGDHAGPRV 241

Query: 237 HDLRHTFAVRSLEHCAHDSQAVARHITALSTYLGHAHVTDTYWYLQSTPELMAHMSEAGE 296
           HD RH FA+ +L         V + + +LSTYLGH  V DTYWYL + PEL   M EA +
Sbjct: 242 HDFRHRFAICTLLGWYRKGLDVEKQLPSLSTYLGHTCVRDTYWYLSACPEL---MQEAAQ 298

Query: 297 TLHR 300
            L R
Sbjct: 299 RLDR 302