Pairwise Alignments

Query, 304 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 303 a.a., Site-specific tyrosine recombinase XerD from Variovorax sp. SCN45

 Score = 57.8 bits (138), Expect = 3e-13
 Identities = 80/296 (27%), Positives = 120/296 (40%), Gaps = 45/296 (15%)

Query: 17  GFKFRTPGVLLRNFVAFAEHRGEHV--ITTATVHEWALQA--------PSPEQRRNRLLT 66
           G    T     R+   FA+  GEH    T  T  E  LQA               NR LT
Sbjct: 24  GLSKNTLAAYRRDLALFAQWLGEHSGGATLGTAKETDLQAYMGARLSNRGKATSANRRLT 83

Query: 67  V----RRFALSLH--AEDPRHEVPSADLFGRASRKRRTPYIYSPEEIRRLIDAARRLGPD 120
           V     R+AL     A DP   +  A    RA +        S +++  L+ A     PD
Sbjct: 84  VFKRYYRWALRERRIAADPSIRLMPARQMPRAIKT------LSEKQVDDLLAA-----PD 132

Query: 121 -DSIRSLTYATMFGLIAATGMRVSEAIAIRLHDVT-DDGLIIAQTKFKKSRLLPLHTTTR 178
            +S   L    M  L+ A+G+RVSE +A++  D++ +DG++    K  K RL+P     R
Sbjct: 133 VESPLGLRDRAMLELMYASGLRVSELVALKAIDMSLNDGVLRVLGKGSKERLVPFGGEAR 192

Query: 179 RALDGYLATRLKA---ASQSDALFISHQGTPLAYPTVITVFLQIIRSIGLRGAPGSRGPR 235
           R ++ YL     A     Q+  LF++ +G  +   T +  ++ + +     G      P 
Sbjct: 193 RWIERYLEESRPAILDGQQTPDLFVTARGAGM---TRVMFWIIVKKHATAAGIHVPLSP- 248

Query: 236 IHDLRHTFAVRSLEHCAHDSQAVARHITALSTYLGHAHVTDTYWYLQSTPELMAHM 291
            H LRH FA   L H           + A+   LGHA ++ T  Y     E +  +
Sbjct: 249 -HTLRHAFATHLLNH--------GVDLRAVQLLLGHADISTTTIYTHVARERLKQL 295