Pairwise Alignments

Query, 304 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 298 a.a., site-specific tyrosine recombinase XerD from Escherichia coli ECRC101

 Score = 58.5 bits (140), Expect = 2e-13
 Identities = 79/282 (28%), Positives = 113/282 (40%), Gaps = 37/282 (13%)

Query: 27  LRNFVAFAEHRGEHVITTATVHEWALQAPSPEQRRN--------RLLT-VRRFALSLHAE 77
           L   V +  HRG   +T AT     LQA   E+           RLL+ VRR    L+ E
Sbjct: 33  LSMMVEWLHHRG---LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYRE 89

Query: 78  DPRHEVPSADLFGRASRK--RRTPYIYSPEEIRRLIDAARRLGPDDSIRSLTYATMFGLI 135
             R + PSA L   AS K  +R P   S  ++ RL+ A       D    L    M  ++
Sbjct: 90  KFREDDPSAHL---ASPKLPQRLPKDLSEAQVERLLQAPLI----DQPLELRDKAMLEVL 142

Query: 136 AATGMRVSEAIAIRLHDVT-DDGLIIAQTKFKKSRLLPLHTTTRRALDGYL---ATRLKA 191
            ATG+RVSE + + + D++   G++    K  K RL+PL       L+ YL      L  
Sbjct: 143 YATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLN 202

Query: 192 ASQSDALFISHQGTPLAYPTVITVFLQIIRSIGLRGAPGSRGPRIHDLRHTFAVRSLEHC 251
               D LF S +   +   T    F   I+   +     S     H LRH FA   L H 
Sbjct: 203 GVSIDVLFPSQRAQQMTRQT----FWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 252 AHDSQAVARHITALSTYLGHAHVTDTYWYLQSTPELMAHMSE 293
           A         +  +   LGH+ ++ T  Y     E +  + +
Sbjct: 259 A--------DLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292