Pairwise Alignments

Query, 304 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 331 a.a., site-specific tyrosine recombinase XerD from Agrobacterium fabrum C58

 Score = 54.3 bits (129), Expect = 4e-12
 Identities = 65/266 (24%), Positives = 114/266 (42%), Gaps = 30/266 (11%)

Query: 51  ALQAPSPEQRRNRLLTVRRFALSLHAEDPRHEVPSADLFGRASRKRRTPYIYSPEEIRRL 110
           A Q  +   +  RL ++R+F   L++E  R + P+  +     +    P   S  ++ RL
Sbjct: 69  AAQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTG-IIDAPRKGLALPKTMSVADVNRL 127

Query: 111 IDAARRLGPDDSIRSLTYATM---FGLIAATGMRVSEAIAIRLHDVTDDG-LIIAQTKFK 166
           +  A +    +    L    M     L+ ATGMRVSE +++ +  +  +G  ++ + K  
Sbjct: 128 LGLAAQEAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGN 187

Query: 167 KSRLLPLHTTTRRALDGYLATRLKAASQSDALFISHQ------GTPLAYPT-------VI 213
           K R++ L      A++ Y A R KA SQ  +   + Q       +P  +P+         
Sbjct: 188 KDRMVLLSRAAIEAMEKYEAGR-KALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPR 246

Query: 214 TVFLQIIRSIGLRGAPGSRGPRIHDLRHTFAVRSLEHCAHDSQAVARHITALSTYLGHAH 273
            VF + ++ I +R    +     H LRH FA   L++ A         + A+   LGH+ 
Sbjct: 247 QVFARDLKDIAIRAGLTASAVSPHVLRHAFASHLLQNGA--------DLRAVQELLGHSD 298

Query: 274 VTDTYWYLQSTPELMAHMSEAGETLH 299
           ++ T  Y   T  L   + E  +T H
Sbjct: 299 ISTTQIY---THVLEERLQELVQTHH 321