Pairwise Alignments

Query, 329 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 297 a.a., site-specific tyrosine recombinase XerD from Erwinia tracheiphila SCR3

 Score =  125 bits (315), Expect = 1e-33
 Identities = 100/293 (34%), Positives = 151/293 (51%), Gaps = 22/293 (7%)

Query: 19  ERRASVHTCDAYAYSFQLLVTFAARRLSKRPCLLQIEDIDVPMILAFLEHIEETRGNKAR 78
           ER  + +T  +Y    + L+ + A        LL +   ++   LA  E +E   G KA 
Sbjct: 17  ERNLAENTLASYRLDLRTLLDWLAHHNRN---LLLVASAELQAFLA--ERLEG--GYKAT 69

Query: 79  SRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALVASLSRTEVQALLNAPDR 138
           S    L+A++  F+YL +R     D      A P  K+ + L   LS  +++ LL AP  
Sbjct: 70  SSARLLSAMRRLFQYL-YREKLREDDPTATLASP--KLPQRLPKDLSEAQIERLLQAPST 126

Query: 139 RSLSGIRDRAMLHLAFAGGLRVSELVGLTLDQFDGRSPASIHIIGKGRRERVLPLWQETA 198
                +RD+AML L +A GLRV+ELV LTL+    R    + +IGKG +ER++PL +E  
Sbjct: 127 EQPLELRDKAMLELLYATGLRVTELVSLTLNNLSLRQ-GVVRVIGKGNKERLVPLGEEAV 185

Query: 199 AAIRAWIAV-RP--KNGDT--ALFLNNAGRMMTRSGFEYILEKHAAAAVSVAPTLATKSI 253
             +  +I   RP   NG T   LF +N  + MTR  F + ++ +A  A      + ++ +
Sbjct: 186 YWLEQFIEYGRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLA-----GIDSEKL 240

Query: 254 SPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRADPTEKLEMLDAL 306
           SPHVLRH+ A H+L    D+R V + LGH+ L +T+IY     TE+L  L  L
Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTYV-ATERLRQLHQL 292