Pairwise Alignments

Query, 329 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Dickeya dianthicola ME23

 Score =  127 bits (319), Expect = 3e-34
 Identities = 99/290 (34%), Positives = 150/290 (51%), Gaps = 22/290 (7%)

Query: 19  ERRASVHTCDAYAYSFQLLVTFAARRLSKRPCLLQIEDIDVPMILAFLEHIEETRGNKAR 78
           ER  + +T  +Y    + L  + A        LLQ +  D+   LA  E +E   G KA 
Sbjct: 19  ERNLAENTLSSYRNDLRSLADWLAHHECS---LLQAQPSDLQDFLA--ERLEG--GYKAT 71

Query: 79  SRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALVASLSRTEVQALLNAPDR 138
           S    L+A++  F+YL        D +  + +    K+ + L   L+  +V ALL AP  
Sbjct: 72  SSARLLSAMRRLFQYLYREKQRTDDPSAPLSS---PKLPQRLPKDLTEAQVDALLAAPVT 128

Query: 139 RSLSGIRDRAMLHLAFAGGLRVSELVGLTLDQFDGRSPASIHIIGKGRRERVLPLWQETA 198
                +RD+AML L +A GLRVSELVGLT+     R    + +IGKG +ER++PL +E  
Sbjct: 129 DQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQ-GVVRVIGKGNKERLVPLGEEAV 187

Query: 199 AAIRAWIAV-RP--KNGDT--ALFLNNAGRMMTRSGFEYILEKHAAAAVSVAPTLATKSI 253
             +  ++   RP   NG T   LF +N  + MTR  F + ++ +A  A     ++ +  +
Sbjct: 188 YWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLA-----SIDSNKL 242

Query: 254 SPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRADPTEKLEML 303
           SPHVLRH+ A H+L    D+R V + LGH+ L +T+IY     TE+L +L
Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV-ATERLRLL 291