Pairwise Alignments

Query, 329 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 337 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  162 bits (411), Expect = 8e-45
 Identities = 104/318 (32%), Positives = 172/318 (54%), Gaps = 5/318 (1%)

Query: 2   TQLAQHLTAFLREHLPRERRASVHTCDAYAYSFQLLVTFAARRLSKRPCLLQIEDIDVPM 61
           T  A+H++ F+ ++LP E  AS++T  AY  +F LL++F  +    +   L ++ I    
Sbjct: 4   TDFAKHISDFISKYLPNENGASLNTITAYRDTFVLLLSFIEKHRKVKLEKLTLDYITKET 63

Query: 62  ILAFLEHIEETRGNKARSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALV 121
           I+AFL+ I+  R     +RN RLAA+ SF+RYL+++    L +  R+ ++  KK  +  +
Sbjct: 64  IVAFLDWIQSERKCSNSTRNLRLAAIHSFYRYLQYQHLDNLYECQRILSIRSKKTAKDSI 123

Query: 122 ASLSRTEVQALLNAPDRRSLSGIRDRAMLHLAFAGGLRVSELVGLTLDQFDGRSPASIHI 181
             LS   ++ LL  PD  +  G R+ A+L L +  G RV E++ LT        PA+I I
Sbjct: 124 KYLSVEGIRLLLQQPDTTTRKGRRNLALLALMYDTGARVQEIIDLTPSMLRLDKPATIKI 183

Query: 182 IGKGRRERVLPLWQETAAAIRAWIAVRPKNGDTA----LFLNNAGRMMTRSGFEYILEKH 237
           IGKG + R++P+       ++ ++     +  +A    LF N+    +TR+G  YI++K+
Sbjct: 184 IGKGNKARLVPMLDAQTVHLKNYLKEYELDSPSAKLYPLFSNSKKEKLTRAGINYIIQKY 243

Query: 238 AAAAVSVAPTLATKSISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRADPT 297
              A      +    I+ H  RH+ AMH+LQA  ++  +   LGH S+Q+TEIY RAD  
Sbjct: 244 VGMARKENKLMIPLKITCHSFRHTKAMHLLQAGVNLVYIRDILGHVSVQTTEIYARADSK 303

Query: 298 EKLEMLDALAPLGIKPGK 315
           +K   L+  A   + PG+
Sbjct: 304 QKRIALEK-AYEDVNPGE 320