Pairwise Alignments

Query, 359 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 383 a.a., Nucleoside ABC transporter, permease protein 1 from Variovorax sp. SCN45

 Score =  151 bits (382), Expect = 2e-41
 Identities = 109/360 (30%), Positives = 168/360 (46%), Gaps = 8/360 (2%)

Query: 1   MISVQRRSGNSLSWNFACYAAAMLCALVSAAALLHLSGGDVAKAFSSLIVGAFGSQKALL 60
           M+ ++ R   S  W++A    A+L  ++   AL    G D  K           +  A+ 
Sbjct: 1   MLKLEPRPELSRFWSYASPILALLITVLIGVALFAALGKDPVKGLLVFFYEPIKNGYAIG 60

Query: 61  GSLAKATPLLLVGLGTVIAFRAKIWNIGQEGQVLAGAMCAYWASLWIGPLP-YWIAFTVL 119
             + KATPLL++ LG  + FR+ +WNIG EGQ + GA+ A   +L        WI   +L
Sbjct: 61  ELMVKATPLLIIALGLAVCFRSNVWNIGAEGQFVFGAIAAGGVALLADKTTGQWIVVAIL 120

Query: 120 VLAGLAGGGALGVLAGVLKTRFGTSEIISTVMLNYIVIFLLAYLLDGGPWMETGVTVAYH 179
             AG+ GG     +   L+ +   +EI+ ++ML Y+   LL Y++ G PW +      + 
Sbjct: 121 A-AGILGGMVWAGIVAFLRDKCNANEILVSLMLVYVATLLLGYMVFG-PWKDPN-GYNFP 177

Query: 180 QSPPVNAMLEWPTLLGQGAHKLHFGFLLALVATVLCAVLLERTPLGYEIRAFGSNPTALR 239
           Q+    A+ + P L      ++  G ++ALV      V L RT  G+  +  G  P A R
Sbjct: 178 QTKTFEAVTQIPRLFK--GSRVSIGLVIALVGAGALWVFLFRTRAGFAQQVGGLAPAASR 235

Query: 240 FRGTDISRLLLVVMLVSGALAGLAGAGELFGTSHRLRAETLLGIGSSGIVVAMVGGLRPS 299
           + G    R + + +L SG  AGLAGA E+ G   +L      G G + I+VA VG L P 
Sbjct: 236 YAGFSARRAVWIALLTSGGAAGLAGALEVAGPLGQLTPYVPAGYGFAAIIVAFVGRLHPV 295

Query: 300 GAMLAALFFGALKSGAIYMRLQSGTPAGLVSAMEGLVLLFFLCAAVATRIHITVRSEAHA 359
           G + +A+       G    + + G P  L    +GL+L  F   A  T I   +R +A A
Sbjct: 296 GMIFSAILMSMFYIGGELAQSRLGLPKSLTGVFQGLLL--FTLLACDTLIAYRIRRKAAA 353