Pairwise Alignments

Query, 295 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 384 a.a., Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1) from Variovorax sp. SCN45

 Score = 72.4 bits (176), Expect = 2e-17
 Identities = 71/266 (26%), Positives = 117/266 (43%), Gaps = 12/266 (4%)

Query: 5   NAAQVEPRVGSPSHGSLPETIARRVGDQWRITGHKTYATGIPLLRWVAVLAVTDEPEPR- 63
           + A  EP  GS   G++ +T A R GD + + G K + T  PL  ++ + A T E   R 
Sbjct: 121 SVAITEPHAGSDV-GAM-KTNAVREGDHYVVNGQKCFITMAPLADYITLFAKTGEVNRRG 178

Query: 64  ---LGSFLVPTSADGIRVEKTWNATGMRATNSDDLILDDVAIPLEDVLEIAPASEGLKRD 120
              +  F+V   + GI +  +    G R T   D+  D+V +P+E+   +     G    
Sbjct: 179 VDNISCFIVDMKSAGITLGGSEKMMGQRGTPHADIFFDNVRVPVEN--RMGEEGRGFISC 236

Query: 121 ERMGAWYFSLVPAIYDGAARGARDWLIDFTTSRAPASLGAPLSTVPRIQDGLGEIEVLLT 180
             +       V A   G A+GA D  + +   R   + G  +     +Q  L ++ + + 
Sbjct: 237 MHILDLNRPTVAASAVGVAQGAFDIAVAYAKERK--AFGKAIGEFQGLQFMLADMHIQIE 294

Query: 181 VNRRLLRSIAEDFDSGR--AFGADAAAVKHTVIANAITVTTLALELGGNPGISRDNPLER 238
             R LL       D+G+       A+ VK      A+ VTT A+++ G  G  R N +ER
Sbjct: 295 AARALLYKCTRAIDAGQHDRLTEMASMVKCFCTDVAMKVTTDAVQVLGGHGYIRGNHVER 354

Query: 239 HHRDALSGKAHAPQNNLIRMMLAKAA 264
             RDA   + +   N + RM++A+ A
Sbjct: 355 MMRDAKVLQIYEGTNQIQRMVIARRA 380