Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 324 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  204 bits (520), Expect = 2e-57
 Identities = 124/322 (38%), Positives = 193/322 (59%), Gaps = 15/322 (4%)

Query: 11  LRRTLLQAVPTILGIVILNFFLLQLAPGDAADVLAGEAGSATEESVAALRARFGLDSPVL 70
           L R +LQA+  ++ + ++ F  L  A G+  D+L GE  +  +E +AA+ AR GLD P+ 
Sbjct: 5   LLRRVLQALGVVVVMTVIVFIGLH-AIGNPIDILIGEDMNQ-QERLAAI-ARLGLDQPLW 61

Query: 71  EQLATYLGNLAQFSLGFSPRYGMPVADLIAQRLPGTLTLMAVALFIAILLGVVLGSLMAS 130
            Q   ++      SLG S  Y      LI QRLP T+ L   AL +AI++GV LG     
Sbjct: 62  RQYLAFVDGALHGSLGRSFVYQEDAVRLILQRLPATMELAFAALLMAIVVGVPLGL---- 117

Query: 131 FAGRIPD----RLLSIFSLLFYSIPSFWIGLMLIVLFSVKLGWLPSGGAATIGSQLKGFP 186
           FAG  P+    R L   S++ +S+P+FW+ LMLI++FSV+LGWLP+ G      +L G  
Sbjct: 118 FAGMKPEHPVSRTLMATSIVGFSLPAFWVALMLIMVFSVQLGWLPASGRGAT-RELFGVQ 176

Query: 187 ---ALLDKARYMVLPATSLALFYVAIYARLTRAAMLEVKNHDFVRTAYAKGLTPFGVTAR 243
                LD  ++++LPA +LALF +++  RLTRA + EV   D+V+ A AKGLTP  V   
Sbjct: 177 WSWLTLDGWQHLLLPAFNLALFKISLVLRLTRAGVREVLPQDYVKFARAKGLTPTRVVLM 236

Query: 244 HILRNALIPITTMAGMHIGGMLGGAVVVETVYSWPGLGRLAFEAVMGRDFTVLLGILLLS 303
           H++RN +IP+ T+ G+ +G  +  AVV E++++WPG G+L  +++   D  V++  L++ 
Sbjct: 237 HVMRNTMIPLVTVLGLELGATIAYAVVTESIFAWPGAGKLILDSINSLDRPVVVAYLMVV 296

Query: 304 SLLVIIANAAVDLVHAWLDPRI 325
            ++ +  N  VDL++  LDPR+
Sbjct: 297 VVIFVTLNLIVDLLYKLLDPRV 318