Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 314 a.a., nickel ABC transporter permease subunit NikB from Escherichia coli ECRC98

 Score =  198 bits (504), Expect = 1e-55
 Identities = 118/316 (37%), Positives = 172/316 (54%), Gaps = 16/316 (5%)

Query: 11  LRRTLLQAVPTILGIVILNFFLLQLAPGDAA-DVLAGEAGSATEESVAALRARFGLDSPV 69
           LRR LL  +P +L   ++ F +L+L  GD A D L       T E +A+ R   GLD P+
Sbjct: 6   LRRFLL-LIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQPL 64

Query: 70  LEQLATYLGNLAQFSLGFSPRYGMPVADLIAQRLPGTLTLMAVALFIAILLGVVLGSLMA 129
             Q  T+L        G S     PV D +   LP TL L   AL + +L  V LG   A
Sbjct: 65  YVQYGTWLWKALHLDFGISFATQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIWAA 124

Query: 130 SFAGRIPDRLLSIFSLLFYSIPSFWIGLMLIVLFSVKLGWLPSGGAATIGSQLKGFPALL 189
               R+PD  +   + L  S+P+FW+  +L++ FSV L WLP+ G         G+    
Sbjct: 125 RHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYG-------GW---- 173

Query: 190 DKARYMVLPATSLALFYVAIYARLTRAAMLEVKNHDFVRTAYAKGLTPFGVTARHILRNA 249
              ++++LPA S+A   +AI ARL RA+ML+V     V  A  +GL       RHILRNA
Sbjct: 174 ---QHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERRHILRNA 230

Query: 250 LIPITTMAGMHIGGMLGGAVVVETVYSWPGLGRLAFEAVMGRDFTVLLGILLLSSLLVII 309
            +P+ T  GMHIG ++GG +++E +++WPG+GR A  A+  RD+ V+    L+  ++ ++
Sbjct: 231 SLPMITAVGMHIGELIGGTMIIENIFTWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVV 290

Query: 310 ANAAVDLVHAWLDPRI 325
            N  VDL++A LDPRI
Sbjct: 291 CNLIVDLLNAALDPRI 306