Pairwise Alignments

Query, 543 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  503 bits (1294), Expect = e-147
 Identities = 253/505 (50%), Positives = 336/505 (66%), Gaps = 5/505 (0%)

Query: 39  AEEPTRGGSVSINIGTEPPVLVLIAHSAGAAYYISGKATESLLSYDKDFNPQPLLATEWT 98
           A  P+  G++++   +EP  LV I + A     +S K TE LL YD D NPQP LAT+W 
Sbjct: 27  AAPPSHSGTLTLLSTSEPTALVTIGNVATPILSVSAKVTEGLLKYDYDVNPQPQLATKWV 86

Query: 99  VSEDGLRYWFKLRQDVRWHDGRDFTAEAVAFSILALKENHPRGRATFAHVKEANVLNSHE 158
           +S DGL Y F LRQ V+WHDG+DFT+  VA+SI  LK+ HPRGR TFA++   +  + + 
Sbjct: 87  ISPDGLTYTFTLRQGVKWHDGKDFTSADVAYSIELLKKIHPRGRNTFANLTAIDTPDKYT 146

Query: 159 VELTLAKPAPYLLTAFASFEAPIVPKHLYEGTKIAENPHNVAPVGTGPYKFVEWVRGSHA 218
             L L+KPAPYL+ A  + E PIVPKH+YEGT  A NP+N AP+GTGP+KF EWVRGSH 
Sbjct: 147 AILRLSKPAPYLIRALVATETPIVPKHIYEGTDPANNPNNNAPIGTGPFKFKEWVRGSHI 206

Query: 219 LFVRNEDYWGSPKPYLDQIIFRFIVDPAAAVAAIETGEVQVSTAN-LPLTDIDRLKANPN 277
           ++ RN DYW  PKP++DQ+I RF+ DPAAA  A ETG V +     +PL D++RLK  P 
Sbjct: 207 VYERNNDYWDKPKPFVDQLIVRFVTDPAAAAVAFETGTVDLGYRTPVPLADLERLKKVPA 266

Query: 278 LVVDTDPAPYSPSIARAEFNLENKYLADIKVRHAIAHAVDKDFIVNTVYLGYATRLDGPV 337
           L  +T    YS ++ R EFNL+N+Y  + KVR A+AHA+D++ IV  V  GY      P+
Sbjct: 267 LRFETKGNSYSSNVTRLEFNLDNEYFKNEKVRQAVAHAIDRNVIVKVVNYGYGQVSYSPI 326

Query: 338 SPDLAKFYSPDLPKYEFDPAKSEKLLDEAGYARGADGFRFKLFID--PTQPSGPPKQTAE 395
           +P L  F+ P    Y FD  K+  LLDEAG+ + A G RF + +D  P    GP  + A+
Sbjct: 327 APGLKAFHDPAPSPYAFDVKKANALLDEAGFPKKAGGVRFSVPLDFNPIGADGP--RLAD 384

Query: 396 YIAQALAKVGIKVELRTQDFATFVKRVFTDRDFDIAIEGMSNLYDPTVGVQRLYWSKNFK 455
           Y+  ALA++GI V +R QD + F+KR++TDRDF     G SNL+DPTVGVQRLYWSKNF 
Sbjct: 385 YLRSALARIGIAVTVRAQDPSAFIKRIYTDRDFAFTHNGASNLFDPTVGVQRLYWSKNFI 444

Query: 456 PGVPFTNGSKYSNPEVDRLLETAAVEIDPKKRLELFNEFQKLVVEDLPTLDIVTPAVITV 515
            GVPF+NG+ Y NP VD+LLE AAVE DP KRL+LF +FQ  V  D+P L++  P  IT+
Sbjct: 445 KGVPFSNGTHYQNPVVDKLLEDAAVENDPGKRLKLFKDFQDTVARDVPDLNLYQPVFITI 504

Query: 516 YDKRVKNLKLGVEHLWSNGADIYLD 540
            ++RV +  L  + + SN AD+++D
Sbjct: 505 ANQRVHDHSLTADGVESNLADVWVD 529



 Score = 25.0 bits (53), Expect = 0.007
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 6   TAILKPTRRAFLLSSVALATATAMPVLPVPSFAAEEPTRGGSVSINIGTEP 56
           TAIL+ ++ A  L    +AT T  P++P   +   +P    + +  IGT P
Sbjct: 146 TAILRLSKPAPYLIRALVATET--PIVPKHIYEGTDPANNPNNNAPIGTGP 194