Pairwise Alignments

Query, 481 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 500 a.a., Circadian clock protein kinase KaiC from Pseudomonas sp. RS175

 Score =  352 bits (903), Expect = e-101
 Identities = 190/463 (41%), Positives = 289/463 (62%), Gaps = 8/463 (1%)

Query: 13  SSGISGLDEILRGGLPASNLYIVQGAPGSGKTTAALQFLRAGVALGEPCIYVSLSQTRAE 72
           ++GI GLD++L GGL   ++++++G PG+GKTT AL FL AG   GE  +Y++LS+T  E
Sbjct: 13  ATGIEGLDDVLCGGLSRGHVFLLEGEPGTGKTTVALHFLLAGARAGERSLYITLSETERE 72

Query: 73  LEAIALSHGWTLD-GIRVEELSASDSI-NRAADQTIFQTTELRLDETRKAIESAIEEHKP 130
           L   A SHGW +D  I + EL+  +S+ N    Q++  +++L L E  + I   +E  KP
Sbjct: 73  LRQGAASHGWEMDDNIVIFELTPPESLLNAEHQQSLLYSSDLELGEATRQIFEVVERVKP 132

Query: 131 SRLVYDSLLEIRLITADSPRFRRELIAFKAFLAQRNIVALLLDTQTSET-DRTGEEVDGI 189
           +R+V DSL EIRL+   S R+RR+++A K +  + +   LLLD  T+E+ D+T   V  +
Sbjct: 133 TRVVLDSLSEIRLLAQSSLRYRRQILAIKHYFVRYDATVLLLDDLTTESLDKT---VHSV 189

Query: 190 AHGVIRLDKSLEEYGGVRRRIEVSKMRGVPVADGYHDMAIREGEGVVVFPRIVPGAAART 249
           AHGVIRL++    YG  RRRI V K RG     GYHD  I   +GV VFPR+V       
Sbjct: 190 AHGVIRLEELTPTYGAERRRIRVVKYRGQKYRGGYHDFTIMT-DGVHVFPRLVAAEHRGQ 248

Query: 250 VKPQLIKSGVDTLDEMFGGGQESGTTTLVIGQAGTGKSTMASLYATAALKRGESVGLFLF 309
              + + SG+  +D + GGG E+G++TL++G AGTGKS +A ++A AA+ RGE   LF+F
Sbjct: 249 YNRRQLSSGIAQMDALLGGGIETGSSTLILGPAGTGKSLIALIFAAAAVNRGEHAALFIF 308

Query: 310 EERIETFFRRSEGLGMALRQFHEDGQLILRDFNPNEISPGEFGQIVQQSVNSEKVKVVVI 369
           +E +   + R + +G+ L+   + G+L++   +  E+SPGEF   V++ V+   +K VVI
Sbjct: 309 DEELGLLYERMKNIGIDLQALQDTGRLLIDQVDAAELSPGEFSHRVRRCVDDGNIKTVVI 368

Query: 370 DSFTGYLNSLPHREKAVRDIQSLLKYLARAGVLTILIVAQHGLLGQGVGIDVDVSFLGDT 429
           DS  GY  ++P     V  +  LL YL R G  T + VAQHGL+G  +   VD+++L DT
Sbjct: 369 DSINGYQAAMPEENALVLHMHELLLYLNRKGAATYMTVAQHGLVGD-MQAPVDITYLADT 427

Query: 430 VLLLRIAEHEGRLRRSITVVKKRHGPHDLDVRELFIQSSGVSV 472
           V+LLR  E  G++RR+I+++KKR G H+  +RE  I + G+++
Sbjct: 428 VILLRYFEALGKVRRAISIIKKRTGSHESTIREYRIGNQGMTI 470



 Score = 43.9 bits (102), Expect = 1e-08
 Identities = 60/237 (25%), Positives = 94/237 (39%), Gaps = 47/237 (19%)

Query: 12  VSSGISGLDEILRGGLPASNLYIVQGAPGSGKTTAALQFLRAGVALGEPC---------- 61
           +SSGI+ +D +L GG+   +  ++ G  G+GK+  AL F  A V  GE            
Sbjct: 254 LSSGIAQMDALLGGGIETGSSTLILGPAGTGKSLIALIFAAAAVNRGEHAALFIFDEELG 313

Query: 62  -IYVSLSQTRAELEAIALSHGWTLDGIRVEELSA---SDSINRAADQTIFQTTELRLDET 117
            +Y  +     +L+A+  +    +D +   ELS    S  + R  D    +T  +     
Sbjct: 314 LLYERMKNIGIDLQALQDTGRLLIDQVDAAELSPGEFSHRVRRCVDDGNIKTVVIDSING 373

Query: 118 RKAI---ESAIEEHKPSRLVYDSLLEIRLITADSPRFRRELIAFKAFLAQRNIVALLLDT 174
            +A    E+A+  H    L+Y                 R+  A    +AQ  +V    D 
Sbjct: 374 YQAAMPEENALVLHMHELLLY---------------LNRKGAATYMTVAQHGLVG---DM 415

Query: 175 QTSETDRTGEEVDGIAHGVIRLDKSLEEYGGVRRRIEVSKMRGVPVADGYHDMAIRE 231
           Q         ++  +A  VI L +  E  G VRR I + K R      G H+  IRE
Sbjct: 416 QAP------VDITYLADTVILL-RYFEALGKVRRAISIIKKR-----TGSHESTIRE 460