Pairwise Alignments

Query, 750 a.a., Oxidoreductase from Sinorhizobium meliloti 1021

Subject, 1187 a.a., nicotinate dehydrogenase subunit B (EC 1.17.2.1) (from data) from Pseudomonas putida KT2440

 Score = 90.1 bits (222), Expect = 6e-22
 Identities = 106/426 (24%), Positives = 166/426 (38%), Gaps = 82/426 (19%)

Query: 5   PSHSKRSFSSVGTRPIRPDGVDKVTGRARYGADFNMPGQLVGRILRSPHAHA-------- 56
           P  +   +  VG    R D   K TG   Y  D  +P  L GR++R P+A          
Sbjct: 180 PLKAIEDYRLVGRSAPRVDIPGKATGELTYVHDMRLPNMLHGRVIRPPYAGHDSGDFVGN 239

Query: 57  IIRKIDTLKAAQLPGVKAVLTAADLPDLTDGDAAMYDILDNCMARKKALYDGHAVAAVAA 116
            +  +D    A LPGV AV+   D                              V  VA 
Sbjct: 240 SLLAVDESSIAHLPGVVAVVVIRDF-----------------------------VGVVAE 270

Query: 117 IDARTAKQALKLIEVEYE----LLPHVTDVDQAFAPDAPLINDTIFTTGVDPKPDRPSNV 172
            + +  + A +L +V ++     LP ++DV QA   D P +  T+               
Sbjct: 271 REEQAIRAAHEL-KVSWKPFTGKLPDLSDVAQAIR-DNPRVQRTVLD------------- 315

Query: 173 SMRSQFGHGDVDAGMARADFVVERTFKTEQTHQGYIEPHACVASVSSDGTADLWVCTQGH 232
                   GDVD G+A A   + R++         I P   +A  ++ G   +W  TQ  
Sbjct: 316 -------QGDVDGGIANASQRLSRSYLWPYQLHASIGPSCALADFTA-GQIRVWSGTQNP 367

Query: 233 FVYRQHCAQLLGMDASKLRVTSSEIGGGFGGKTHVWAEPVALALSRKAGRPVKLVMTRDE 292
            + R   A LL  D +++ +   E  G +G          A+ LSR   RPV++ +TR++
Sbjct: 368 HLLRADLAWLLACDEARIEIIRMEAAGCYGRNCADDVCADAVLLSRAVQRPVRVQLTREQ 427

Query: 293 --VFRASGPTSATSIDVKIGALKDGTIIAADATLRYSCGPY-------------AGAWAE 337
             V+   G      ID  + A  DG++ A D    Y                    A  E
Sbjct: 428 EHVWEPKGTAQLMEIDGGLNA--DGSVAAYDFQTSYPSNGAPTLALLLTGAVEPVPALFE 485

Query: 338 VGAMTAFACYKLENVRTVGYEVLVNRPKTAAYRAPSAPMAAFAVESAIDELAKKVGMNPI 397
           +G  T+   Y  E++R V    +    + +  R  SA   +FA ES IDELA   G++P+
Sbjct: 486 MGDRTSIPPYDYEHMR-VTINDMTPLVRASWMRGVSAMPNSFAHESYIDELAFAAGVDPV 544

Query: 398 DFRIRN 403
           ++R+++
Sbjct: 545 EYRLKH 550



 Score = 76.3 bits (186), Expect = 9e-18
 Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 5/146 (3%)

Query: 603 GAGVSFATHICDIEVDPETGATKVLRYTVVQDAGKAVHPTYVEGQYQGGAAQGIGWALNE 662
           G G ++A  + D+ VD  TG   V R  +  DAG  V+P  V  Q  G   Q     L E
Sbjct: 602 GFGAAWAAWVADVAVDRRTGEVAVTRVVIGHDAGMMVNPEGVRHQIHGNVIQSTSRVLKE 661

Query: 663 EYIYGNDGRLQNAGFLDYRIPVCSDLPMIDTQILEIPNPNHPYGVRGVGETSIVPPLAAV 722
           +  +  +  + +  +  Y I    +LP ID  ++ +P  + P    G GE++ VP  AA+
Sbjct: 662 QVSF-EESTVASKEWGGYPILTFPELPAID--VMMLPRQHEP--PMGSGESASVPSAAAI 716

Query: 723 ANAVSNAVGVRMLHIPMSPPRILAAL 748
           ANA+ +A G+R   +P++  R+ AAL
Sbjct: 717 ANAIFDATGIRFRELPITAERVRAAL 742



 Score = 43.1 bits (100), Expect = 8e-08
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 468 DGTVSLAVGTVDVG-GSRASLSLVAAEELGIDYSQVRTVIADTSSLGYNDMTDGSRGTFS 526
           DG V    G VD+G G R SL+ + AEEL +   QV  V+ DT        T  S     
Sbjct: 55  DGMVYAFNGHVDLGTGIRTSLAQIVAEELDLRMDQVHMVLGDTERAPNQGATIASATLQI 114

Query: 527 SSMATISAARNAIKILRERAAQMWDIPVEDVTWEKGHAVA 566
           S++    AA  A + L ++AA     P E +  E G  +A
Sbjct: 115 SAVPLRKAAATARRYLLQQAALRLGCPPEMLRIEDGTVIA 154