Pairwise Alignments

Query, 323 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 342 a.a., ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

 Score =  140 bits (352), Expect = 6e-38
 Identities = 101/307 (32%), Positives = 162/307 (52%), Gaps = 14/307 (4%)

Query: 16  GSRRGLWLLPLVIAIAMALWLAATTSQFGQSSNLANLVAQGMPLLITAVGQMFVVLVGGL 75
           GS R + LL ++ A+ + +  A+    F    N+  ++       I  VG   +++VGG+
Sbjct: 32  GSMREMGLLLIIAALCVGMSFASP--YFLTWDNVRAMLLSFSIEGIVVVGMTILLIVGGI 89

Query: 76  DLSIGSVVSFTTAILA-LDLPGFVTIPAVFVLAG---LIGATNGYCVTRLSVHPIVATLS 131
           DLS+GSVV F   +   L L GF    A  V  G   LIGA  G CVTR+ ++  +A+L+
Sbjct: 90  DLSVGSVVCFAMVVTGKLFLMGFDPWTAGLVAIGASALIGAMIGGCVTRIGLNHFIASLA 149

Query: 132 MQYIVLGITRVLR---PVSGGAVPDSVRWMVEGSLFGIPLPVFWGIVTMLVAWKLLYGSR 188
              IV G+   L    P S  ++P   +++ +G+LFGIP  +   ++ ++V+  +L  S 
Sbjct: 150 FMVIVRGLCLALTQGTPQSLFSLPAEFKFIGQGTLFGIPAVILIFLLIVVVSDFVLRRST 209

Query: 189 YGLHLFAIGGGVASGSADAARNFGIPANRNILLAYVICTLFAALAGVFLAGRIVSGDPNV 248
               +F  G      +  AA   GI          V+C+  A LAGV    R  +  P  
Sbjct: 210 LLRRVFYTGS-----NEKAALYSGIRVGHVKFWVTVLCSASAGLAGVIYTARFGAATPTF 264

Query: 249 GLLMELDAITAVAIGGTQLSGGVGSLHGTVIGVAALALLSNGMNLLNVTPFVQTAIKGIL 308
           G+ MEL+ I A  IGG  L GG G++ G V+G+A L+++++ + LL+V+P+ Q  IKG++
Sbjct: 265 GMGMELNVIAAAVIGGASLKGGSGTVLGAVLGLALLSVVTSSLILLDVSPYWQDVIKGLI 324

Query: 309 LMAVVAL 315
           L+A V +
Sbjct: 325 LLAAVTI 331