Pairwise Alignments

Query, 412 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 388 a.a., arabinose transporter permease from Pseudomonas simiae WCS417

 Score = 77.8 bits (190), Expect = 5e-19
 Identities = 110/397 (27%), Positives = 171/397 (43%), Gaps = 51/397 (12%)

Query: 16  ISLVVGAGVVSAFQVGKAP----AALAAVQGDLALSLAAASWLISAFAILGALAGAP-IG 70
           +SL++ A  +SAF +G         L  V  DL +S+  A WL++ +A LG   GAP + 
Sbjct: 3   LSLLILA--LSAFAIGTTEFVIMGLLPDVAADLGVSIPGAGWLVTGYA-LGVAIGAPFMA 59

Query: 71  LAVDRIG--ARTMASLGLLLQAAGSALGALSPGFTALLATRVIEGLGFLCLVVAAPALIA 128
           LA  ++   A  +A +G+ +   G+ L AL+  +  L+  RV+  L           + A
Sbjct: 60  LATAKLPRKAALVALMGIFI--IGNLLCALASDYNVLMFARVVTALCHGAFFGIGSVVAA 117

Query: 129 GLAPIQIRDRAMALWASFMPVGLTVI-MLAAPLLSIVT----WRG-FWFLNASILVSYAM 182
            L P   R  A+AL    M  GLT+  +L  PL + +     WR  FW +    +V+   
Sbjct: 118 NLVPANKRASAVAL----MFTGLTLANVLGVPLGTALGQEAGWRSTFWAVTVIGVVALIG 173

Query: 183 LLRWGLHPPPNHPRPYRKIHQDIGEALVSPGPWVLGGLFTAFSAIFFAVFGLLPPLLSQR 242
           L+R+    P         +  ++  AL   G W+   +   F+A  F +F  + PLL   
Sbjct: 174 LIRF---LPAKRDEEKLDMRAELA-ALKGAGIWLSLSMTALFAASMFTLFTYVAPLLGDV 229

Query: 243 LGISNETASMLSALAIAASGVGNLVCGQLLARGFQPARLLNFSFGIMALCGIGI------ 296
            G+S +  +    L      VGN++ G+L  +  + A  L   F  MA+    +      
Sbjct: 230 TGVSPKGVTWTLLLIGLGLTVGNIIGGKLADK--RLAATLIGVFISMAVVSTALTWTSVA 287

Query: 297 -----FSHTLWAIASYALCVVFSFAGGLIPVVIFDSAPRQAPGAELVGVTIGFAMQGNNL 351
                 +  LWA AS+A           I VV F  A   AP   +  + IG    GN L
Sbjct: 288 VIPTEITLFLWATASFAAVPALQ-----INVVTFGKA---APNL-VSTLNIGAFNIGNAL 338

Query: 352 GLIIGPAAASGLAGAFGWPMVSVAVVGIAFVAALLVL 388
           G  +G    S +A  FG   V +A   +A +A L+ L
Sbjct: 339 GAWVG---GSVIAHGFGLTRVPLAAAVLAILALLVTL 372



 Score = 28.5 bits (62), Expect = 4e-04
 Identities = 45/173 (26%), Positives = 65/173 (37%), Gaps = 26/173 (15%)

Query: 229 FAVFGLLPPLLSQRLGISNETASMLSALAIAASGVGNLVCGQLLARGFQPARLLNFSFGI 288
           F + GLLP + +  LG+S   A  L  +   A GV        LA    P +       +
Sbjct: 20  FVIMGLLPDVAAD-LGVSIPGAGWL--VTGYALGVAIGAPFMALATAKLPRKA-----AL 71

Query: 289 MALCGIGIFSHTLWAIAS-----------YALCVVFSFAGGLIPVVIFDSAPRQAPGAEL 337
           +AL GI I  + L A+AS            ALC    F  G +       A ++A    L
Sbjct: 72  VALMGIFIIGNLLCALASDYNVLMFARVVTALCHGAFFGIGSVVAANLVPANKRASAVAL 131

Query: 338 VGVTIGFAMQGNNLGLIIGPAAASGLAGAFGWPMVSVAVVGIAFVAALLVLPF 390
           +         G  L  ++G    + L    GW     AV  I  VA + ++ F
Sbjct: 132 M-------FTGLTLANVLGVPLGTALGQEAGWRSTFWAVTVIGVVALIGLIRF 177