Pairwise Alignments

Query, 382 a.a., membrane efflux protein from Sinorhizobium meliloti 1021

Subject, 356 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  147 bits (371), Expect = 4e-40
 Identities = 105/334 (31%), Positives = 163/334 (48%), Gaps = 5/334 (1%)

Query: 44  ESADPRLAPPLVRVAEATRPERAERAFTGTIAARVQSNLGFRVPGKIVERLVDVGQQVKA 103
           E A P    P++ +      +     F GTI AR +SNLGFRVPG+I  R+VDVG +V+ 
Sbjct: 20  EDAPPEPVRPVLSMEVKAEDQENLGRFAGTIQARYESNLGFRVPGRIARRVVDVGAEVEK 79

Query: 104 GQALMRIDETDLRLALTAKRNAVAAARAVLVQAIADERRYATLVKGGVAATPQRYEQAKA 163
           G  L  +D TD +  L + +  +A  +A  + A A+ RR   L   GV A  Q  + A+ 
Sbjct: 80  GALLAVLDPTDQQNQLRSAQGDLARVQAQYINAQANARRQQELFNRGVGAQAQ-LDIAQT 138

Query: 164 ALDTAAAQLAAAEAEARVAENETTYSVLVAGADGTVVATLGEPGQVVAAGQAVVQLAHAG 223
            L T  A L  A+A    A ++  Y+ L     G V A   E GQVV+AGQ VV LA   
Sbjct: 139 DLKTTQATLDQAKASVNQANDQLRYAELRTDHAGIVTAWNAEAGQVVSAGQQVVTLARPD 198

Query: 224 LREALVALPETVRPAIGSEAEASVYG--SDGRRGRARMRQISDAADPQTRTYEARYVLDG 281
           ++EA++ LP  +   +  +    V G         A +R+I   A   TRT  AR  L  
Sbjct: 199 IKEAVIDLPAGLAERLPPDVVFLVAGQLDPSVNTTAIVREIEPQAQSATRTRRARLTLTE 258

Query: 282 DAASAPLGATVTISIRNGEGQSEVAVPVGAVLNDGSRTGVWVVDQASATARFVPIEIKRL 341
              +  LG  +++++        + VP+ A+     +T +W++D  S T +   I +   
Sbjct: 259 TPPAFRLGTAISVTLSTAIA-PRIEVPLSALQEVDGKTRIWLLDTHSQTVQTRDISVISR 317

Query: 342 GEETASVT-GIELGEQVVALGAHLLKDGAPVRTE 374
             ++A +  G++ GE++V  G + LK G  V+ +
Sbjct: 318 DADSALLNDGVKPGERIVIAGVNSLKPGQKVKID 351