Pairwise Alignments

Query, 382 a.a., membrane efflux protein from Sinorhizobium meliloti 1021

Subject, 360 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  135 bits (341), Expect = 1e-36
 Identities = 97/309 (31%), Positives = 158/309 (51%), Gaps = 6/309 (1%)

Query: 71  TGTIAARVQSNLGFRVPGKIVERLVDVGQQVKAGQALMRIDETDLRLALTAKRNAVAAAR 130
           TG I ARVQ++L FRV GKI++R+VDVG +V A Q L ++D  DL+  + + +  V A +
Sbjct: 51  TGDIQARVQTDLSFRVGGKIIQRMVDVGDRVTAKQVLAKLDPKDLQTNVDSAQAQVVAEQ 110

Query: 131 AVLVQAIADERRYATLVKGGVAATPQRYEQAKAALDTAAAQLAAAEAEARVAENETTYSV 190
           A + Q  A   R   L+  G  +  + Y+ A+AAL ++ + LAAA+A+   A  +  Y+ 
Sbjct: 111 ARVKQTAAAFVRQEKLLPKGYTSRSE-YDSAQAALRSSQSALAAAQAQLANAREQLGYTS 169

Query: 191 LVAGADGTVVATLGEPGQVVAAGQAVVQLAHAGLREALVALPET--VRPAIGSEAEASVY 248
           L+A A G + A   E GQVV A   +  LA  G R+A+  + E+  V P   +    S+ 
Sbjct: 170 LIADAPGVITARQAEVGQVVQATVPIFSLARDGERDAVFNVYESLLVEPPPDAPITVSLL 229

Query: 249 GSDGRRGRARMRQISDAADPQTRTYEARYVLDGDAASAPLGATVTISIRNGEGQSEVAVP 308
            +   +   ++R+++ A    T T + +  L        LG+ V+ +  NG  ++ + +P
Sbjct: 230 DNPSIKAVGKVREVTPAVAANTGTVQVKIALQALPKGMELGSVVS-ATANGPAKASIELP 288

Query: 309 VGAVLNDGSRTGVWVVDQASATARFVPIEIKR-LGEETASVTGIELGEQVVALGAHLLKD 367
             A+  D S   VW++D     A+   + + R L  +     G++ GE+VV  G  LL  
Sbjct: 289 WAALTKDLSEPAVWLID-GDGKAQLHKVTVARYLTGKVIIGDGLKGGEKVVVAGGQLLHP 347

Query: 368 GAPVRTELQ 376
           G  V    Q
Sbjct: 348 GMRVEIAQQ 356