Pairwise Alignments

Query, 382 a.a., membrane efflux protein from Sinorhizobium meliloti 1021

Subject, 366 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  175 bits (444), Expect = 2e-48
 Identities = 117/328 (35%), Positives = 177/328 (53%), Gaps = 9/328 (2%)

Query: 51  APPLVRVAEATRPERAERA---FTGTIAARVQSNLGFRVPGKIVERLVDVGQQVKAGQAL 107
           A   +R A   +P+ + ++   + G + AR + +L FR+ GK+ +RLV+ G++VKA QAL
Sbjct: 27  AQTTIRPAMVVQPQPSSQSMDSYPGEVRARYEPDLAFRIGGKVSKRLVEEGERVKANQAL 86

Query: 108 MRIDETDLRLALTAKRNAVAAARAVLVQAIADERRYATLVKGGVAATPQRYEQAKAALDT 167
             +D  D+RL L A R  VA A A L    A+  RY TL+   + +  Q Y+ ++     
Sbjct: 87  AELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLMDRQMVSRSQ-YDNSENLYRA 145

Query: 168 AAAQLAAAEAEARVAENETTYSVLVAGADGTVVATLGEPGQVVAAGQAVVQLAHAGLREA 227
             A+L   +AE  VA N+  Y+VL A  DG V   + E GQVV+AGQ V  LA  G RE 
Sbjct: 146 GVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQVVSAGQTVFTLATDGEREV 205

Query: 228 LVALPET--VRPAIGSEAEASVYGSDGRRGRARMRQISDAADPQTRTYEARYVLDGDAAS 285
           L++LPE    R  IG      ++    +R   R+R++S AADP++RT+ AR    G    
Sbjct: 206 LISLPEQGFGRFKIGQPVSVELWSQPDQRFTGRIRELSPAADPKSRTFAARVAFTGGKVP 265

Query: 286 APLGATVTISIRNGEGQSEVAVPVGAVLNDGSRTGVWVVDQASATARFVPIEIKRLGEET 345
           A LG +  + I+  +G   ++VP+ A+  +   + VW V Q   T +  P+ I   GE+T
Sbjct: 266 AELGQSARVFIQ-VDGDIPLSVPLSALSAENGASYVWRV-QPDNTLKRTPVRIGAFGEKT 323

Query: 346 ASV-TGIELGEQVVALGAHLLKDGAPVR 372
             V  G+   + V+A G H+L +G  VR
Sbjct: 324 VPVLEGLSPTDWVIAAGVHVLHEGQQVR 351