Pairwise Alignments

Query, 382 a.a., membrane efflux protein from Sinorhizobium meliloti 1021

Subject, 403 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  168 bits (425), Expect = 3e-46
 Identities = 110/310 (35%), Positives = 164/310 (52%), Gaps = 6/310 (1%)

Query: 66  AERAFTGTIAARVQSNLGFRVPGKIVERLVDVGQQVKAGQALMRIDETDLRLALTAKRNA 125
           A+  F+  + ARV+S LGFRV GKI  R  ++GQ V+AGQ L ++D  D RLA  A R  
Sbjct: 52  AQPEFSAEVRARVESRLGFRVAGKITRRQAELGQHVQAGQVLAQLDPQDYRLAAEAARAQ 111

Query: 126 VAAARAVLVQAIADERRYATLVKGGVAATPQRYEQAKAALDTAAAQLAAAEAEARVAENE 185
            AAA      A AD +RY  L +    +  +  E+ +     A AQL  A+A+     N+
Sbjct: 112 QAAALTNRDLAAADLKRYRELREQNFISGAE-LERRETTWKAAQAQLEQAQAQLSSQGNQ 170

Query: 186 TTYSVLVAGADGTVVATLGEPGQVVAAGQAVVQLAHAGLREALVALPETVRPAIGSEAEA 245
             Y+ LVA   G + A   EPGQVV AG  VV++A  G R+ + A+PE     + + +  
Sbjct: 171 ANYTTLVADVAGIITAIEAEPGQVVQAGTPVVRIAQDGARDVVFAVPEDRATLVKTGSPV 230

Query: 246 SVYG-SDGRRGRARMRQISDAADPQTRTYEARYVLDGDAASAPLGATVTI--SIRNGEGQ 302
           +V G S G   + ++R+++ +AD  TRTY  +  +D  A + PLGATV          G 
Sbjct: 231 TVRGWSGGNELQGQVREVAASADAVTRTYSIKVAIDA-ATAPPLGATVYARPQALAHAGA 289

Query: 303 SEVAVPVGAVLNDGSRTGVWVVDQASATARFVPIEIKRL-GEETASVTGIELGEQVVALG 361
           + + +P  A+  +G  + VWV+D+++ T R   +++    G E    +GI  G  VVA G
Sbjct: 290 TVLKLPTSALRQEGKGSAVWVLDKSTMTVRSQAVQVATADGNEAVIASGITPGMMVVAAG 349

Query: 362 AHLLKDGAPV 371
            H+L  G  V
Sbjct: 350 VHVLSPGQKV 359