Pairwise Alignments

Query, 1036 a.a., Cation/multidrug efflux protein from Sinorhizobium meliloti 1021

Subject, 1021 a.a., multidrug transporter AcrB from Pseudomonas simiae WCS417

 Score =  791 bits (2042), Expect = 0.0
 Identities = 431/1021 (42%), Positives = 627/1021 (61%), Gaps = 6/1021 (0%)

Query: 1    MSFNLSALAVRERAVTLFFIVLLAAAGVYAFMSLGRAEDPSFTIKTLTVTTVWPGATARE 60
            M FNLS  A+R R + LF ++LLA  G  ++  LG++EDP FT K + + T WPGATA+E
Sbjct: 1    MGFNLSEWALRNRQIVLFLMILLAVVGTLSYSKLGQSEDPPFTFKAMVIKTNWPGATAQE 60

Query: 61   MQDLVAEPLEKRIQELTWYDRVETTTRPGYAFLTVTLKDSTPPTAVEEEFYQARKKLGDE 120
            +   V E +EK++ E   Y+R+ + +RPG + +T   +DS     + E +YQ RKK+ D 
Sbjct: 61   VSRQVTERIEKKLMETGEYERIVSFSRPGESQVTFIARDSMHSAQIPELWYQVRKKISDI 120

Query: 121  ARNLPSGVFGPFVNDEYSDVSFALYALKAKGMPMRELVRQAEVIRQDLLHVPGVKKINIL 180
             + LP  + GPF NDE+      +YAL   G     L   A+ I+  L  V  V K+ +L
Sbjct: 121  RQTLPPDIQGPFFNDEFGTTFGNIYALTGDGFDYAVLKDYADRIQIQLQRVADVGKVELL 180

Query: 181  GERPEQIFVEFSYAKLATLGISAQDIAAALQRQNTVTPAGSIDTRGPQVFIRFDGAYNSV 240
            G + E+I++E S  KLATLG+    +  ALQ QN V+ AG  +T   +V +R  G + +V
Sbjct: 181  GLQDEKIWIELSNLKLATLGLPLAAVQQALQEQNAVSTAGFFETPSERVQLRVSGNFKTV 240

Query: 241  QAIAATPIVAAGRTLKLSDFAEVRRGYEDPATYIIRHEGEPAIMLGAVMQQGWNGLELGK 300
            + I   PI    RT ++ D A++ RG+ DP    +R+ G  AI L   M+ G + L LGK
Sbjct: 241  EEIRNFPIRVGDRTFRIGDVADIHRGFNDPPAPRMRYMGADAIGLAVAMRDGGDILVLGK 300

Query: 301  ALEERSAAIARTLPLGMTLAKVSDQAVNIDAAVGEFMLKFAMALGVVLLVSLLSLGWRVG 360
            ALE   A + + LP GM L KVSDQ   +  +VGEF+   A AL +VLLVS  SLG R G
Sbjct: 301  ALEGEFARLQKNLPAGMELRKVSDQPAAVKTSVGEFVQVLAEALAIVLLVSFFSLGVRTG 360

Query: 361  IVVALAVPLTLAVVFLIMLETGRFFDRITLGALILALGLLVDDAIIAIEVMVVKMEEGMD 420
            +VVALA+PL LA+ F  M   G    +I+LGAL+LALGLLVDDAIIA+E+M +KME+G D
Sbjct: 361  MVVALAIPLVLAMTFATMYYLGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGYD 420

Query: 421  RIKAAAYAWSHTAAPMLSGTLVTIIGLMPVGFARSTAGEYAGNIFWVVGFALIVSWVVAV 480
            R+KAA++AW+ TA PML+GTL+T  G +P+  A+S+ GEY  +IF VV  AL+ SWV AV
Sbjct: 421  RLKAASFAWTSTAFPMLTGTLITAAGFLPIATAQSSTGEYTRSIFQVVTIALLASWVAAV 480

Query: 481  IFTPYLGVKMLPDIKPVEGGHHAI-----YDTPNYRRLRGIIEFAVRHKYVTCAVVGIVM 535
            +F PYLG K+LPD+  +    H       Y TP Y+R+R ++E+ VR +     +  ++ 
Sbjct: 481  VFVPYLGEKLLPDLAKIHAAKHGTDGPDPYGTPFYQRVRRMVEWCVRRRKTVIVLTLLLF 540

Query: 536  ALSVVGMGGVKHQFFPTSDRPEVLVEVRMPEGASIETTIATVEKLERWLQEQPEADILTS 595
              SV     V  QFFP S R E++V++++ EGAS+  T   V++LE  L+E    D   +
Sbjct: 541  IGSVALFRFVPQQFFPASGRLELMVDLKLAEGASLSNTADQVKRLEALLKEHAGIDNYVA 600

Query: 596  YIGQGAPRFFFAMAPELPDPAFAKIVVLTPDSHAREALKLRLRAAVSDGLVPEGYVRVTQ 655
            Y+G G+PRF+  +  +LP  +FA+ VVL      RE+L+  L   +++   P+   RVT+
Sbjct: 601  YVGTGSPRFYLPLDQQLPAASFAQFVVLAKTIEERESLRTWLIQTLNEQF-PDLRSRVTR 659

Query: 656  LVFGPYTPFPVEFRIMGPDPAQLYQISEKALEIMKGVPDVRQANRDWGNRTPVLRFVPDQ 715
            L  GP   +PV+FR+ G    ++  ++ K    ++  P V   + DW   + ++    DQ
Sbjct: 660  LENGPPVGYPVQFRVTGEHIEEVRALARKVAVKVRENPHVANVHLDWEEPSKIVYLNIDQ 719

Query: 716  DRLNLIGLSPAEAAQQMQLLLSGIPVTQVRENIRNVPVVARSAGESRLDPARLADFSLMS 775
            DR   +G+S A  ++ +Q  L+G  V+Q RE+   + ++ R     R + + L   ++ +
Sbjct: 720  DRARALGVSTANLSKFLQSSLTGSSVSQYREDNELIEILLRGTVHERTELSLLPSLAVPT 779

Query: 776  RDGRQVPLDQIGHSEIRFEEPILKRRDRTPVITIRSDINEATQPPEVSQQIMTALQPLIA 835
             +G+ V L QI   E  FEE I+  R+R P +TIR+DI    QP  + QQI+  L+ + A
Sbjct: 780  DNGKSVALSQIATLEYGFEEGIIWHRNRLPTVTIRADIYGKEQPATLVQQILPTLEGVRA 839

Query: 836  SLPVGYRIEMGGNIEESLKANVALVKIFPAMIAAMLIVIILQVRSLSTMTMVMLTAPLGL 895
             LP GY +++GG +E+S +   ++    P  I  +L +++LQ+RS S   MV LTAPLGL
Sbjct: 840  ELPDGYLLDVGGTVEDSARGQNSVKAGVPLFIVVVLTLLMLQLRSFSRTAMVFLTAPLGL 899

Query: 896  AGVVPVLLLFNQPFGFNAILGLIGLAGILMRNTLILTEQIKENKAAGLHDYHAVIEATVQ 955
             GV   LL+F QPFGF A+LG I L+G++MRN++IL +QI+++  AGL  + A+IEATV+
Sbjct: 900  IGVTLFLLVFRQPFGFVAMLGTIALSGMIMRNSVILVDQIEQDIKAGLAPWQAIIEATVR 959

Query: 956  RTRPVILTALAAVLAFVPLTHSVFWGSMAYTLIGGTAVGTVMILLFLPALYAAWFRIKPT 1015
            R RP++LTALAAVLA +PL+ SVF+G MA  ++GG  V T + LLFLPALYAAWFR+KP 
Sbjct: 960  RFRPIVLTALAAVLAMIPLSRSVFFGPMAVAIMGGLIVATALTLLFLPALYAAWFRVKPQ 1019

Query: 1016 A 1016
            A
Sbjct: 1020 A 1020