Pairwise Alignments

Query, 1036 a.a., Cation/multidrug efflux protein from Sinorhizobium meliloti 1021

Subject, 1038 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  237 bits (605), Expect = 3e-66
 Identities = 238/1021 (23%), Positives = 434/1021 (42%), Gaps = 40/1021 (3%)

Query: 4    NLSALAVRERAVTLFFIVLLAAAGVYAFMSLGRAEDPSFTIKTLTVTTVWPGATAREMQD 63
            N+SA ++R     +   VLL   G+ +F ++     P   + T+TV+   PGA   +++ 
Sbjct: 2    NVSAWSIRNPIPAVMLFVLLTFGGLLSFNAMKVQNFPDIDLPTVTVSASLPGAAPSQLET 61

Query: 64   LVAEPLEKRIQELTWYDRVETTTRPGYAFLTVTLKDSTPPTAVEEEFYQARKKLGDEARN 123
             VA  LE  I  +     + T  + G A L V  +   P   V+E     R  +     +
Sbjct: 62   DVARKLENSIATVQGLKHITTKVQDGAATLIVEFRLEKP---VQEAVDDVRSAVQRVRAD 118

Query: 124  LPSGVFGPFVND-EYSDVSFALYALKAKGMPMRELVRQAEV-IRQDLLHVPGVKKINILG 181
            LP+ V  P V   + +      + + +  M    L    +  + + LL +PGV  +N +G
Sbjct: 119  LPADVRDPVVTKLDLAGQPVLAFTIASSQMDNEALSWYVDNDVTKRLLALPGVGAVNRVG 178

Query: 182  ERPEQIFVEFSYAKLATLGISAQDIAAALQRQNTVTPAGSIDTRGPQVFIRFDGAYNSVQ 241
                Q+ V+    KL  LG SA DI+  L++  T +  G  D  G +  +R      S  
Sbjct: 179  GATRQVHVDLDPVKLQALGASAGDISRQLRQVQTESAGGRFDLGGSEQPVRTMATVKSAD 238

Query: 242  AIAATPIVAA-GRTLKLSDFAEVRRGYEDPATYIIRHEGEPAIMLGAVMQQGWNGLELGK 300
             +A   IV   GR ++L   A +     +P    + + G+P +       +G + +E+G 
Sbjct: 239  QLADMQIVLTDGRRIRLDQVARISDTIAEPRAAALLN-GKPVVGFEVARSRGASEVEVGH 297

Query: 301  ALEERSAAIARTLPLGMTLAKVSDQAVNIDAAV-GEFMLKFAMALGVVLLVSLLSLGWRV 359
            A+++  A +    P  + L +  +    ++    G   L +  A+  V++V L    WR 
Sbjct: 298  AVQKALADMRAQRP-DIELTEAFNFVDPVEEEYNGSLHLLYEGAILAVVVVWLFLRDWRA 356

Query: 360  GIVVALAVPLTLAVVFLIMLETGRFFDRITLGALILALGLLVDDAIIAIEVMVVKMEEGM 419
              V A+A+P+++   F+ M   G   + I+L AL L +G+LVDDAI+ +E +V  +  G 
Sbjct: 357  TFVSAVALPMSVIPAFIGMHLLGFSVNVISLLALSLVVGILVDDAIVEVENIVRHLRMGK 416

Query: 420  DRIKAAAYAWSHTAAPMLSGTLVTIIGLMPVGFARSTAGEYAGNIFWVVGFALIVSWVVA 479
               +AA  A       +++ T   I   +P  F    AG++     W    A+  S VVA
Sbjct: 417  TPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFKQFGWTAALAVFASLVVA 476

Query: 480  VIFTPYLGVKMLPDIKPVEGGHHAIYDTPNYRR-LRGIIEFAVRHKYVTCAVVGIVMALS 538
             + TP +   ML  +   E         P + R     +E++  +++ T  +  +    S
Sbjct: 477  RVLTPMMAAYMLKPVVTAE-------TEPGWLRWYMRAVEWSTHNRFKTMVLATLFFFGS 529

Query: 539  VVGMGGVKHQFFPTSDRPEVLVEVRMPEGASIETTIATVEKLERWLQEQPEA-DILTSYI 597
            +  +  +K  F P  D  +  V + +  G+++  T A  E+  R + + P    + T+  
Sbjct: 530  LAMIPLLKTGFIPPDDNSQTQVYLSLAPGSTLAQTTAAAEETRRRVMQIPHVKSVYTTVA 589

Query: 598  GQGAPRFFFAM--APELPDPAFAKIVVLTPDSHAREALKLRLRAAVSDGLVPEGYVRVTQ 655
            G  A    FA    PE         +    D   ++ ++ ++R+A+    +P   VR T 
Sbjct: 590  GGSAGGDPFASFGTPETRKATLTIKLDPRGDRPRKQVIENQIRSALE--TLPG--VRSTV 645

Query: 656  LVFGPYTPFPVEFRIMGPDPAQLYQISEKALEIMKGVPDVRQANRDWGNRTPVLRFVPDQ 715
             + G    + +   + G DP  L   +    + ++ +P +           P +   PD 
Sbjct: 646  GLGGSGEKYIL--ALTGEDPVALASAASAVEKDLRTIPGLGNITSTASLVRPEIAVRPDF 703

Query: 716  DRLNLIGLSPAEAAQQMQLLLSG---IPVTQVRENIRNVPVVARSAGESRLDPARLADFS 772
             R   +G++ +  A+ +++   G     + ++    R VP+V +    +R D   L   S
Sbjct: 704  ARAADLGVTSSAIAETLRVATLGDYDQSLAKLNLAQRQVPIVVKLEDSARQDIDLLGRLS 763

Query: 773  LMSRDGRQVPLDQIGHSEIRFEEPILKRRDRTPVITIRSDINEATQPPEVSQQIMTALQP 832
            +    G  V L+Q+    +     ++ R DR+  +    +++          +      P
Sbjct: 764  VPGTRG-PVMLNQVASLSMEGGPAVIDRYDRSRNVNFEIELSGVGLG---DAKAAVQKLP 819

Query: 833  LIASLPVGYRIEMGGNIEESLKANVALVKIFPAMIAAMLIVIILQVRSLSTMTMVMLTAP 892
             I  LP G RI   G+ E   +   +        +  + IV++L  +       ++   P
Sbjct: 820  SIQKLPPGVRIAEVGDAEVMTELFASFGLAMLTGVLCIYIVLVLLFKDFLHPVTILCALP 879

Query: 893  LGLAGVVPVLLLFNQPFGFNAILGLIGLAGILMRNTLILTE-QIKENKAAGLHDYHAVIE 951
            L L G    LL+  +     +++GLI L GI  +N+++L E  I   +  G+  + A+ +
Sbjct: 880  LALGGAFVGLLIGQKALSMPSLIGLIMLMGIATKNSILLVEYAIVARRDHGMSRWDALRD 939

Query: 952  ATVQRTRPVILTALAAVLAFVPL------THSVFWGSMAYTLIGGTAVGTVMILLFLPAL 1005
            A  +R RP+I+T LA     +P+        S F   MA  +IGG    TV+ LL +PA+
Sbjct: 940  ACHKRARPIIMTTLAMGAGMLPIAVGFGSADSSFRSPMAMAVIGGLITSTVLSLLVVPAV 999

Query: 1006 Y 1006
            +
Sbjct: 1000 F 1000