Pairwise Alignments

Query, 1036 a.a., Cation/multidrug efflux protein from Sinorhizobium meliloti 1021

Subject, 1052 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  742 bits (1916), Expect = 0.0
 Identities = 403/1034 (38%), Positives = 616/1034 (59%), Gaps = 29/1034 (2%)

Query: 3    FNLSALAVRERAVTLFFIVLLAAAGVYAFMSLGRAEDPSFTIKTLTVTTVWPGATAREMQ 62
            FNLS  A+    +T + +V+L   G +A+  LG+ EDP FT + + V T WPGATA+++ 
Sbjct: 15   FNLSKWALDHAPLTRYLMVVLMVLGAFAYFQLGQDEDPPFTFRAMVVKTYWPGATAQQVA 74

Query: 63   DLVAEPLEKRIQELTWYDRVETTTRPGYAFLTVTLKDSTPPTAVEEEFYQARKKLGDEAR 122
            + V + LE+ +QE  + D++ + ++PG + +   +KDS+  T V   +Y  RKK+GD   
Sbjct: 75   EQVTDKLERTLQEAPYADKIRSYSKPGESQIIFNIKDSSKSTEVANVWYTVRKKIGDMRA 134

Query: 123  NLPSGVFGPFVNDEYSDVSFALYALKAKGMPMRELVRQAEVIRQDLLHVPGVKKINILGE 182
             LP+GV GPF ND++ DV   +YAL+++G    EL   A+ +RQ LL V  V K++  G 
Sbjct: 135  TLPAGVQGPFFNDDFGDVYGVIYALESEGFSYAELKTLADDVRQQLLRVKDVAKVDQFGV 194

Query: 183  RPEQIFVEFSYAKLATLGISAQDIAAALQRQNTVTPAGSIDTRGPQVFIRFDGAYNSVQA 242
            + E++++E S  +LA LG+    +   L  QN V  AGSI +    V +R  G + SV  
Sbjct: 195  QDEKVYIEISQKRLAQLGLDFNAVLQQLGSQNAVESAGSISSPQDVVQVRVAGQFTSVDQ 254

Query: 243  IAATPI-VAAGRTLKLSDFAEVRRGYEDPATYIIRHEGEPAIMLGAVMQQGWNGLELGKA 301
            +   PI  ++G  +KL D A++ RGY DP    + H+G+  I LG  M +G + + LGKA
Sbjct: 255  LRDMPIRGSSGSQIKLGDIADIHRGYVDPPAVKVHHQGKEVIALGVSMAKGGDIIALGKA 314

Query: 302  LEERSAAIARTLPLGMTLAKVSDQAVNIDAAVGEFMLKFAMALGVVLLVSLLSL------ 355
            L+  +A I + LP G+ LA+V DQ V++ ++V EF+     A+ +VL VS++SL      
Sbjct: 315  LKATTATIDKRLPAGVKLAQVQDQPVSVASSVNEFVGVLIEAVAIVLAVSIISLGLHKGG 374

Query: 356  --GW----RVGIVVALAVPLTLAVVFLIMLETGRFFDRITLGALILALGLLVDDAIIAIE 409
              GW    R G+VVA+ +PL LAV FL M   G    +I+LG+LI+ALGLLVDDAIIA+E
Sbjct: 375  RFGWYIDMRPGLVVAITIPLVLAVTFLAMNYFGIGLHKISLGSLIIALGLLVDDAIIAVE 434

Query: 410  VMVVKMEEGMDRIKAAAYAWSHTAAPMLSGTLVTIIGLMPVGFARSTAGEYAGNIFWVVG 469
            +MV KMEEG D+ +AA YA+  TA PML+GTL+T  G +P+G A+S  GEY   IF V  
Sbjct: 435  MMVRKMEEGYDKARAATYAYDVTAKPMLTGTLITAAGFLPIGLAKSVTGEYTFAIFAVTV 494

Query: 470  FALIVSWVVAVIFTPYLGVKML------PDIKPVEGGHHAIYDTPNYRRLRGIIEFAVRH 523
             AL++SW+V+V F PYLG  +L      PD  P     H ++D+  Y   R  + + V H
Sbjct: 495  IALVLSWIVSVYFVPYLGTLLLKVKAHDPDAPP-----HEMFDSAFYNAFRRAVNWCVEH 549

Query: 524  KYVTCAVVGIVMALSVVGMGGVKHQFFPTSDRPEVLVEVRMPEGASIETTIATVEKLERW 583
            ++ T     ++ AL +VGMG V+ QFFP S RPE+LV++  PEG S        +++E+ 
Sbjct: 550  RWATIGATVLIFALGIVGMGKVQQQFFPDSSRPEILVDIWFPEGTSFAANEEVAKRVEKR 609

Query: 584  LQEQPEADILTSYIGQGAPRFFFAMAPELPDPAFAKIVVLTPDSHAREALKLRLRAAVSD 643
              E+     ++++IG G PRF+  +    P    ++++VL  D   RE L+L+L   ++ 
Sbjct: 610  FMEEAGVSTVSTWIGSGVPRFYLPLDQVFPQTNVSQLIVLAKDLKVRETLRLKLPQLLAQ 669

Query: 644  GLVPEGYVRVTQLVFGPYTPFPVEFRIMGPDPAQLYQISEKALEIMKGVPDVRQANRDWG 703
               PE   RV  L  GP   +PV+FR++GPDPA L   +++   +++  P++R  N +W 
Sbjct: 670  EF-PEVRGRVKLLPNGPPVAYPVQFRVIGPDPALLRGHADEVKAVLRDNPNMRGVNDNWN 728

Query: 704  NRTPVLRFVPDQDRLNLIGLSPAEAAQQMQLLLSGIPVTQVRENIRNVPVVARSAGESRL 763
                V+R   DQ +   +G++    AQ  + + SG  V Q REN   + +V R A + R 
Sbjct: 729  ESVKVIRLEVDQAKARALGVTSQAIAQASKTMFSGTTVGQYRENDLLIDIVLRQAPDERQ 788

Query: 764  DPARLADFSLMSRDGRQVPLDQIGHSEIRFEEPILKRRDRTPVITIRSDINEATQPPEVS 823
              + + +  + +  GR +PL QI      +E  ++ R +R   IT++ D+ E  Q   V+
Sbjct: 789  AISDIGNAYIPTSSGRSIPLTQIAKPVFTWEPGVMWRENRDYAITVQGDVIEGLQGATVT 848

Query: 824  QQIMTALQPLIASLPV----GYRIEMGGNIEESLKANVALVKIFPAMIAAMLIVIILQVR 879
             Q++  L+ L A        GYR+E+ G  EES K + ++V   P M+  +  +++LQ+ 
Sbjct: 849  TQLLPKLRELEAGWAAAGQGGYRVEVAGAAEESSKGSASIVAGVPIMLFLVFTLLMLQLH 908

Query: 880  SLSTMTMVMLTAPLGLAGVVPVLLLFNQPFGFNAILGLIGLAGILMRNTLILTEQIKENK 939
            S S   +V +T P+G+AGV   LL+ N+PFGF A+LG+I L G++ RN +IL +QI+ ++
Sbjct: 909  SFSRSLLVFITGPMGIAGVAGALLVLNRPFGFVALLGVIALMGMIQRNAVILIDQIEIDR 968

Query: 940  AAGLHDYHAVIEATVQRTRPVILTALAAVLAFVPLTHSVFWGSMAYTLIGGTAVGTVMIL 999
            AAG+  + A++E+ V+R RP++LTA AAVLA +PL+ SVFWG MA  ++GG  V TV+ L
Sbjct: 969  AAGVPAWDAIVESAVRRLRPIVLTAAAAVLAMIPLSRSVFWGPMAVAIMGGLIVATVLTL 1028

Query: 1000 LFLPALYAAWFRIK 1013
            L LPA+YAA FR+K
Sbjct: 1029 LALPAMYAAAFRVK 1042