Pairwise Alignments

Query, 1036 a.a., Cation/multidrug efflux protein from Sinorhizobium meliloti 1021

Subject, 1021 a.a., efflux RND transporter permease subunit from Dickeya dianthicola ME23

 Score =  689 bits (1779), Expect = 0.0
 Identities = 393/1002 (39%), Positives = 590/1002 (58%), Gaps = 5/1002 (0%)

Query: 3    FNLSALAVRERAVTLFFIVLLAAAGVYAFMSLGRAEDPSFTIKTLTVTTVWPGATAREMQ 62
            +NLSA A+  + +  FF++++ AAGV ++  L R EDP+FTIKT  V+  WPGAT ++  
Sbjct: 9    WNLSAWALAHQQLVAFFMLVIVAAGVMSYERLPRNEDPAFTIKTAVVSASWPGATVQDTV 68

Query: 63   DLVAEPLEKRIQELTWYDRVETTTRPGYAFLTVTLKDSTPPTAVEEEFYQARKKLGDEAR 122
              V + LEK++QE  + D +E+ +RPG A + V L+DSTPP+ V+  +Y  RKK+ D A 
Sbjct: 69   SFVTDVLEKKLQETPYLDFIESYSRPGEAVIFVNLRDSTPPSEVQGIWYAIRKKMKDIAP 128

Query: 123  NLPSGVFGPFVNDEYSDVSFALYALKAKGMPMRELVRQAEVIRQDLLHVPGVKKINILGE 182
            +LP GV  P VNDE+ D    +Y   A G   REL  + + IR +LL  P V KI++LG 
Sbjct: 129  SLPDGVGEPAVNDEFDDTFGTIYGFTADGYSPRELRDRVDDIRTELLATPDVGKIDVLGV 188

Query: 183  RPEQIFVEFSYAKLATLGISAQDIAAALQRQNTVTPAGSIDTRGPQVFIRFDGAYNSVQA 242
            + EQI   FS  +LA +G+  Q + AALQ QN V+P G+I T   +V +R  GA+ S ++
Sbjct: 189  QDEQIVAAFSPRQLAGMGLDLQQVTAALQAQNAVSPTGAIRTDNDKVALRVSGAFVSEES 248

Query: 243  IAATPIVAAGRTLKLSDFAEVRRGYEDPATYIIRHEGEPAIMLGAVMQQGWNGLELGKAL 302
            +    +   GR + L+D A V R   +P     R  G+PAI L   M    N L+ G+AL
Sbjct: 249  LRQVTLHIGGRFIPLTDIATVYRQAAEPPAPAFRVNGQPAIGLAVSMAPTGNMLDFGQAL 308

Query: 303  EERSAAIARTLPLGMTLAKVSDQAVNIDAAVGEFMLKFAMALGVVLLVSLLSLGWRVGIV 362
              + A I  +LP G+ +  V+DQ+  + ++V  F+     A+ +VL VS +SLG R G+V
Sbjct: 309  RSKMATIGASLPHGIEVINVADQSSVVKSSVNGFVKVLLEAVVIVLAVSFVSLGSRAGLV 368

Query: 363  VALAVPLTLAVVFLIMLETGRFFDRITLGALILALGLLVDDAIIAIEVMVVKMEEGMDRI 422
            VA ++P+ L + F  M   G    RI+LGALI+ALGLLVDDA+I +E MV  +E+G  R 
Sbjct: 369  VAASIPMVLTMTFTGMEIAGIGLQRISLGALIIALGLLVDDAMITVEAMVSSLEKGEARE 428

Query: 423  KAAAYAWSHTAAPMLSGTLVTIIGLMPVGFARSTAGEYAGNIFWVVGFALIVSWVVAVIF 482
            +AA  A+  TA PML+GTLV + G +PVGFA S+AGEY  ++F VV  +L+ SW VAV+F
Sbjct: 429  QAATRAYDTTAFPMLTGTLVMVAGFIPVGFAASSAGEYCYSLFIVVLISLLSSWAVAVLF 488

Query: 483  TPYLGVKMLPDIKPVEGGHHAIYDTPNYRRLRGIIEFAVRHKYVTCAVVGIVMALSVVGM 542
            +P +GV +LP        HHA   +  Y RL   +  A+R++  T  +   ++AL+VV  
Sbjct: 489  SPLIGVWLLPKAMNAH-DHHAGRLSRAYDRL---LSTALRYRGRTLLLSVALLALAVVAA 544

Query: 543  GGVKHQFFPTSDRPEVLVEVRMPEGASIETTIATVEKLERWLQEQPEADILTSYIGQGAP 602
            G ++ +FFP SDRPE+LV + +P  AS + T   V +LE+ L+  P+ D  ++Y+G GA 
Sbjct: 545  GRLEGEFFPASDRPELLVSLTLPRNASQQATEREVVRLEQSLKNDPDLDHFSTYVGSGAV 604

Query: 603  RFFFAMAPELPDPAFAKIVVLTPDSHAREALKLRLRAAVSDGLVPEGYVRVTQLVFGPYT 662
            RF+  M   L +   A++VV+      R+AL+ RL   +          RV+ L  GP  
Sbjct: 605  RFYLPMDVLLQNENIAQLVVVAKGLKERDALRARLEKRLQQDF-SHLVTRVSPLELGPPV 663

Query: 663  PFPVEFRIMGPDPAQLYQISEKALEIMKGVPDVRQANRDWGNRTPVLRFVPDQDRLNLIG 722
             +P+++R+ GPD  ++ + +     ++ G PD R+ N   G     +R   +Q     +G
Sbjct: 664  GWPLKYRVTGPDIDKVREYAAGLATLIGGNPDAREVNLTAGEPERAIRIDLNQTEARAVG 723

Query: 723  LSPAEAAQQMQLLLSGIPVTQVRENIRNVPVVARSAGESRLDPARLADFSLMSRDGRQVP 782
            +S  + A  +  + SG  VT VR+  R V VV R+  E R +   +A   L + +G++VP
Sbjct: 724  ISSQDVASALATIFSGSVVTSVRDRNRMVGVVVRARDEERQNLDTVASLQLRAANGQRVP 783

Query: 783  LDQIGHSEIRFEEPILKRRDRTPVITIRSDINEATQPPEVSQQIMTALQPLIASLPVGYR 842
            L QI       +EPI+ RR R P IT+++D+    +   +S  +   +    A+LP GY 
Sbjct: 784  LGQIASVGYGVDEPIIWRRQRLPFITVQTDLAPGVRAQTLSTTLAPQVAAYQAALPAGYH 843

Query: 843  IEMGGNIEESLKANVALVKIFPAMIAAMLIVIILQVRSLSTMTMVMLTAPLGLAGVVPVL 902
            IE GG+  ES K N ++ ++ P  +  MLI++++Q++  S M + +L AP GL GVV  +
Sbjct: 844  IEEGGSAAESNKGNNSVYQVLPVTLLVMLILLMVQLQRFSRMMLALLMAPFGLIGVVAAM 903

Query: 903  LLFNQPFGFNAILGLIGLAGILMRNTLILTEQIKENKAAGLHDYHAVIEATVQRTRPVIL 962
            L    P GF A+LG+I LAG+++RN +IL  ++  N AAG+    A+I A   R+RP++L
Sbjct: 904  LPTGTPMGFVALLGVIALAGMIIRNAVILISEVDTNTAAGMTTNEAIIHAARHRSRPILL 963

Query: 963  TALAAVLAFVPLTHSVFWGSMAYTLIGGTAVGTVMILLFLPA 1004
            TALAA+L  +P+   VFWG MAY +IGG  V T++ L  LPA
Sbjct: 964  TALAAILGMIPIATQVFWGPMAYAIIGGLIVATLLTLTVLPA 1005