Pairwise Alignments

Query, 505 a.a., reverse transcriptase from Sinorhizobium meliloti 1021

Subject, 618 a.a., Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) from Sphingobium sp. HT1-2

 Score =  168 bits (425), Expect = 6e-46
 Identities = 140/436 (32%), Positives = 201/436 (46%), Gaps = 90/436 (20%)

Query: 47  AWQRVASNKGGRTAGV-----DGMTVGRIRNRSEHRFLVDLQADLRSGAYRPSPARRKLI 101
           A+  +ASNKG  T GV     DG +  R+ N         L A + +G YR +P RR  I
Sbjct: 39  AYAEMASNKGALTRGVTNNTLDGFSFERVEN---------LIARISAGDYRFTPVRRVYI 89

Query: 102 PKAGKPGQFRPLGIPTIRDRVVQGAAKILLEPIFEAQFWHVSYGFRPGRNTHGALEYIRR 161
           PKA   G+ RPLG+PT  D++VQG  K+LLE ++E  F   S+GFR GR+ H AL+ I+ 
Sbjct: 90  PKAN--GKKRPLGVPTADDKLVQGVVKLLLEVVYEPVFSVHSHGFRRGRSCHTALDKIKN 147

Query: 162 AALPQKRDEDTRRNRLPYPWVIEGDIKGCFDNINHHHLLERMRKRIGDRRVVRLVGLFLK 221
                K             W ++ D+ G FDNI+H  LL  ++KRI D+R +++V   LK
Sbjct: 148 GWTGVK-------------WFVDVDVVGFFDNIDHRILLNLLKKRIDDKRFIKVVEGMLK 194

Query: 222 AGVLTEDQFLRTDAGTPQGGIISPLLANIALSAIEERYE-----------RWTYHRKKTQ 270
           AG + E +F  T +GTPQGGI+SP+LANI L  ++E  E           R    R +T 
Sbjct: 195 AGYMEEWKFHATMSGTPQGGIVSPILANIYLHELDEFLEQEKARFDKGRMRAFTRRYRTL 254

Query: 271 A------RRKSNGVAAAASARDSDRIAGRCVYLPV---------------------RYAD 303
           A      R+K++ + A     ++DR+  +   L                       RYAD
Sbjct: 255 ATAIRLNRQKADVLYAEGRTVEADRLKQKVAKLEAERRSTPSKDGFDPNYRRLLFCRYAD 314

Query: 304 DFVVLVSGSLEEAMAEKSALADYLIKTTGLTLLPEKTKVTAMTEGFEFLGFRFSVHWDKR 363
           DF++ V GS  +A      + D+L     L    EK+ ++  T G  FLG+        R
Sbjct: 315 DFLIGVIGSKADARDIMQRVTDFLRDELRLEASAEKSGISKATTGTLFLGYGVKTATANR 374

Query: 364 Y---GYGPRVEIPKAKAANLRHKVKQ--------------------LTQRDSISVSLGEK 400
                 G RV + ++    +R  V Q                    + +   I  S  E 
Sbjct: 375 LRKTRIGGRVVLMRSPGDRVRLLVPQNRIVRFNREKGYGDLGRLRAVHRAYLIDSSALEI 434

Query: 401 LRGVNAITSGWANYYR 416
           +   NA   G+ANYYR
Sbjct: 435 VLAYNAEMRGFANYYR 450