Pairwise Alignments

Query, 505 a.a., reverse transcriptase from Sinorhizobium meliloti 1021

Subject, 392 a.a., reverse transcriptasematurase from Sinorhizobium meliloti 1021

 Score =  152 bits (385), Expect = 2e-41
 Identities = 137/428 (32%), Positives = 199/428 (46%), Gaps = 65/428 (15%)

Query: 53  SNKGGRTAGVDGMTVGRIRNRSEHRFLVDLQADLRSGAYRPSPARRKLIPKAGKPGQFRP 112
           +NKG   AG DG+++          +   ++  + +G YRP P RR  IPK    G  R 
Sbjct: 3   ANKGA--AGADGLSIEATAAHLRTAW-PGIRERVLAGTYRPMPVRRVTIPKPD--GGERE 57

Query: 113 LGIPTIRDRVVQGAAKILLEPIFEAQFWHVSYGFRPGRNTHGALEYIRRAALPQKRDEDT 172
           LGIPT+ DR++Q A   +L+P+ +  F   S+GFRPGR+ HGA+         Q   +  
Sbjct: 58  LGIPTVTDRLIQQALLQVLQPLLDPAFSEHSHGFRPGRSAHGAV------LAAQSLVQSG 111

Query: 173 RRNRLPYPWVIEGDIKGCFDNINHHHLLERMRKRIGDRRVVRLVGLFLKAGVLTEDQFLR 232
           RR       V++ D++  FD +NH  L++R+ KRI D+RV+RL+  +L +G++       
Sbjct: 112 RRI------VVDVDLEKFFDRVNHDILIDRLSKRISDKRVIRLIRAYLNSGIMDHGVVQE 165

Query: 233 TDAGTPQGGIISPLLANIALSAIEERYERWTYHRKKTQARRKSNGVAAAASARDSDRIAG 292
              GTPQGG +SPLLAN+ L  +++  ER                              G
Sbjct: 166 RVMGTPQGGPLSPLLANVLLDEVDKELER-----------------------------RG 196

Query: 293 RCVYLPVRYADDFVVLVSGSLEEAMAEKSALADYLIKTTGLTLLPEKTKVTAMTEGFEFL 352
            C    VRYADD  V V     +A     AL   L     LT+   K+ VT++  G +FL
Sbjct: 197 HCF---VRYADDCNVYVGS--RKAGERVMALLRRLYGRLHLTINEGKSAVTSVF-GRKFL 250

Query: 353 GFRFSVHWDKRYGYGPRVEIPKAKAANLRHKVKQLTQRDSISVSLGEKLRGVNAITSGWA 412
           GF F   W  R G   R    K   A  + +V+QLT+R S   S+ E    +     GW 
Sbjct: 251 GFSF---WRGRDGAVKRRVADKPLNA-FKRRVRQLTRR-SGGRSMAEVAERLRVYVLGWK 305

Query: 413 NYYRYCVGAGRVFVALDWYI--GLRLYCWLHKKRPKATPSELW--GSKQPSRRRA---TR 465
            Y+R      R+F  L+ ++   +R     H KR K T   L   G+K    R+    +R
Sbjct: 306 AYFR-LAQTPRLFKELEEWMRHRVRAIQLKHWKRGKTTYKALLAKGAKPEVARQIAVNSR 364

Query: 466 RVWREGSV 473
           R WR   +
Sbjct: 365 RWWRNSGM 372