Pairwise Alignments

Query, 505 a.a., reverse transcriptase from Sinorhizobium meliloti 1021

Subject, 419 a.a., reverse transcriptasematurase from Sinorhizobium meliloti 1021

 Score =  136 bits (342), Expect = 2e-36
 Identities = 125/421 (29%), Positives = 187/421 (44%), Gaps = 74/421 (17%)

Query: 42  RVLRHAWQRVASNKGGRTAGVDGMTVGRIRNRSEHRFLVDLQADLRSGAYRPSPARRKLI 101
           R +  A++ V +N+G   AGVDG T+  I  +     L  +   + SG Y P P R   I
Sbjct: 16  RRVYEAYKAVKANRGA--AGVDGQTL-EIFEKDLAANLYKIWNRMSSGTYFPPPVRAVSI 72

Query: 102 PKAGKPGQFRPLGIPTIRDRVVQGAAKILLEPIFEAQFWHVSYGFRPGRNTHGALEYIRR 161
           PK  K G  R LG+PT+ DR+ Q   K ++EP  ++ F   SYG+RPG++   A+     
Sbjct: 73  PK--KAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSALDAVGV--- 127

Query: 162 AALPQKRDEDTRRNRLPYPWVIEGDIKGCFDNINHHHLLERMRKRIGDRRVVRLVGLFLK 221
                     TR+    Y WV+E DIKG FDN+ H  LL+ +RK +     +  +  +L 
Sbjct: 128 ----------TRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLT 177

Query: 222 AGVLTEDQFLRTDAGTPQGGIISPLLANIALSAIEERYERWTYHRKKTQARRKSNGVAAA 281
           A +    + +    GTPQGG++SP+LAN+ L      ++ W                   
Sbjct: 178 APMEKNGEVIERSRGTPQGGVVSPILANLFL---HYAFDLWMTRTHPD------------ 222

Query: 282 ASARDSDRIAGRCVYLP-VRYADDFVVLVSGSLEEAMAEKSALADYLIKTTGLTLLPEKT 340
                          LP  RYADD +V    S ++A A K  L+  L    GL + P KT
Sbjct: 223 ---------------LPWCRYADDGLVHCQ-SEQQAEALKVELSSRL-AACGLQMHPTKT 265

Query: 341 KVTAMTE----------GFEFLGFRF------SVHWDKRY-GYGPRVEIPKAKAANLRHK 383
           K+    +           F+FLG++F      +   D+ + GY P V     K  ++R  
Sbjct: 266 KIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQRDEFFCGYTPAVSPTALK--SMRAT 323

Query: 384 VKQLTQRDSISVSLGEKLRGVNAITSGWANYY-RYCVGAGRVFVALDWYIGLRLYCWLHK 442
           +K L        +L E  + +N +  GW  YY RY   A      L  Y+  +L  W+ +
Sbjct: 324 IKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRSA---LSTLADYVNQKLRAWIRR 380

Query: 443 K 443
           K
Sbjct: 381 K 381