Pairwise Alignments

Query, 505 a.a., reverse transcriptase from Sinorhizobium meliloti 1021

Subject, 473 a.a., Group II intron-encoding maturase from Pseudomonas putida KT2440

 Score =  156 bits (394), Expect = 2e-42
 Identities = 130/426 (30%), Positives = 197/426 (46%), Gaps = 65/426 (15%)

Query: 22  WSKANPDDQWRDMWGWLTDLRVLRHAWQRVASNKGGRTAGVDGMTVGRIRNRSEHRFLVD 81
           W+ A PD     +         LR A+QRV SNKG    G DGMTV  +    + ++   
Sbjct: 47  WTNAEPDTLMERVLAPAN----LRRAYQRVVSNKGA--PGADGMTVADLAGYVK-QYWPT 99

Query: 82  LQADLRSGAYRPSPARRKLIPKAGKPGQFRPLGIPTIRDRVVQGAAKILLEPIFEAQFWH 141
           L+A L +G Y P   R   IPK    G  R LGIP++ DR++Q A +  L PIF+  F  
Sbjct: 100 LKARLLAGEYHPQAVRAVEIPKP--QGGTRQLGIPSVVDRLIQQALQQQLTPIFDPLFSD 157

Query: 142 VSYGFRPGRNTHGALEYIRRAALPQKRDEDTRRNRLPYPWVIEGDIKGCFDNINHHHLLE 201
            SYGFRPGR+TH A+E  R       R            W +E D++  FD +NH  L+ 
Sbjct: 158 YSYGFRPGRSTHQAIEMARAHVTAGHR------------WCVELDLEKFFDRVNHDILMA 205

Query: 202 RMRKRIGDRRVVRLVGLFLKAGVLTEDQFLRTDAGTPQGGIISPLLANIALSAIEERYER 261
            + +RI D+ V+RL+  +L+AG+++         GTPQGG +SPLL+NI L  ++   ER
Sbjct: 206 CIERRIKDKCVLRLIRRYLEAGIMSGGVVSPRQEGTPQGGPLSPLLSNILLDELDRELER 265

Query: 262 WTYHRKKTQARRKSNGVAAAASARDSDRIAGRCVYLPVRYADDFVVLVSGSLEEAMAEKS 321
              HR                                VRYADD  + V  S         
Sbjct: 266 -RGHRF-------------------------------VRYADDANIYVR-SPRAGERVLV 292

Query: 322 ALADYLIKTTGLTLLPEKTKVTAMTEGFEFLGFRFSVHWDKRYGYGPRVEIPKAKAANLR 381
           ++  +L +   LT+  +K++V A     ++LG+  S H        PR+ + +     LR
Sbjct: 293 SVERFLRERLKLTVNRKKSQV-ARAWKCDYLGYGMSWHQQ------PRLRVARMSLDRLR 345

Query: 382 HKVKQLTQRDSISVSLGEKLRGVNAITSGWANYYRYCVGAGRVFVALDWYIGLRLYC--W 439
            +++ L  R   +  +   +  +N +  GWA+Y++    + R    LD ++  +L C  W
Sbjct: 346 DRLRMLL-RSVRARKMATVIERINPVLRGWASYFKLS-QSKRPLEELDGWVRHKLRCVIW 403

Query: 440 LHKKRP 445
              K+P
Sbjct: 404 RQWKQP 409